Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1116 ATGGCGAAGGGTACTGATTCAGAGGAGTTTGTGGTGTTGTCTCGGGTTCGGCCGGGCTGCAAACGGGAGTTTGCCTTTGCAGTGAAGGCTCAATCAGCGATCGCTGGATCTTTGGGCCGGACTCGGACTCGGAACGATAGGGGTGGGCTTTGGGGCAATGGGGGTTCAGAGATTTCGAATAATAAGAGGCAAAAGAGCTCGGTTTCCAACTCAGAGAAAAATAATGCGGAGGAAAGATCTGCTGAAGATGGAATCAGGAGCAATGAAGCAGATTCGATGGACAATGAGGCGGTGAGAAGTGGGGACGCGGAGCAGGGGAACCATCCGGCGGATAATCCGATGCATACTGCCGGTGTTGGTGAACTTAAGAGCTGTCCGGGGGGCGAAGAGGAGTTTAAGGATGATACGCCGGCTCCAATGCATAGAGAGGATGCAGAGATTAGTGAAACTCAAAATGCCGATGTAGTGGAGAATGCAACTTCGGATCAACGGCCGAGGAGAGTTTCTGAAACTGATTTGATGCCCAATGCCGATACTATGGAGATCTCTGCTGTCAACAATGGTGAGGAGAATACAGGGACGAAGAGGAGTAGTGGCTTGGTGCCTCGGGTTCCAAGGCGGTTCCCTGCAAAATTAAAGGAGCTTCTTGACACTGGTATTCTCGAGGACTTACCTGTGCAGTACATTCGAGGCTCAAGAACGAGAGGAAGTGGAGAATCAGGGCTTCGGGGTGTGATAAAGGGCTCTGGGATCCTCTGCTCTTGCAATTCTTGCAAGGGAACAAAAGTTGTCACACCCAACTTATTCGAGCTGCATGCTGGTAGTTCAAATAAACGTCCCCCTGAGTACATTTACCTTGAGAACGGGACTTCCCTCCGCGGTGTAATGAATGCATGGAAAAATGCTGCATTGGACTCTTTGGATGAAGCCATAAGAGTGGCCATTGGTTGTTCAATGATAAAGAAATCCACATTCTGTCTGAACTGTAAAGGTCGTATTTCTGAAGCTGGCATTGGGAATTCAAAGGTTTTATGTATGCTCCATGAACTCCTTGTGTCAAAGTGCAGCTCATCAGGAAGTAAGAGTTATGGGAGGGTAACTAAAAAAGATCTGAGCTTGCATAAATTAGTTTTTGGAGAAAATGGCCTGCCTGAAGGAACAGAAGTGGGTTATTATGTTCGTGGACAGCAATTGCTGGTTGGCTACAAAAGGGGTTCTGGAATCTTTTGTACTTGCTGTAACTCTGAGGTCAGTCCATCACAATTTGAGGCTCATGCTGGTTGGGCATCACGCCGCAAACCTTACCTGCATATTTACACATCTAATGGGGTGTCTCTCCACGAATTCTCAATCTCTCTATCAAGAGGCAGAGAGATTTCTGTCAGTGATAATGATGATCTCTGCAGCATATGCCTTGATGGAGGAAACCTTTTGTGTTGTGATGGATGCCCAAGGGTCTTTCACAAAGAATGTGTGTCACTGGCAAACATCCCCAAGGGCAAGTGGTTCTGCAAATTTTGCAATAATATGTTGCAAAAAGAAAAATTTGTAGAACATAATGCCAATGCTGTGGCTGCAGGAAGGGTAGCAGGTGTGGACCCAATCGAACAGATTACAAAACGATGCATTCGCATTGTAAACACTCAAGTTGATGAAATGGGAGGATGTGCCTTGTGCAGAAGGCATGAATTCAGCAGATCCGGGTTTGGTCCTCGCACTGTTATGCTTTGTGATCAGTGTGAGAAAGAATTCCATGTTGGGTGCTTAAGAGAGCATGACATGGATGACCTAAAGGAAGTGCCTAAAGGCAAATGGTTTTGTTGCCATGACTGCAAGAGAATTAATTCTTCTTTGCAGAAGTTGGTTGTTCATGGAGAAGAGGAGCTTCCACATAATGTGTTGACGACTATAAAGGAAAAATATGGAAGAAATGGTTCTGCTTGCAGTAAGGATCCTGATATAAAATGGAGGCTCATTTGTGGGAGAAGGGCTTCTTCTATTGAAGCGGGATCATTGCTTTCTCAGGCTCTATCCATATTTCATGAACAATTTGATCCAATTGCTGATGCTGCAGGCCGAGACCTTCTACCTGACATGGTTCATGGCAAAAGCACAAGGGAGTGGGATTTTGGAGGCATGTACTGTGCCATATTAACAATTAGCTCCCAAGTTGTATCAGCAGCTGCCTTCCGAATATTTGGAAAGGAAGTTGCAGAACTGCCTCTTGTGGCTACACGGAGTGATTGCCAAGGCCAGGGTTACTTCCAGACCCTGTTCTCTTGCCTTGAGGGGCTGCTTGGTGTTCTCGAGGTGAGGAGTCTTGTGCTTCCTGCTGCTGAAGGAGCAGAGTCCATATGGACAAACAAGTTTGGTTTTAACAAGGTGACACAAGAGCAGCGGAACAATTTCAGAAGAGATTACCAGATGGTGACTTTCCAAGGGACATTGATGCTGCAGAAGTTGGTTCCTAGGTGA 2475 46.46 MAKGTDSEEFVVLSRVRPGCKREFAFAVKAQSAIAGSLGRTRTRNDRGGLWGNGGSEISNNKRQKSSVSNSEKNNAEERSAEDGIRSNEADSMDNEAVRSGDAEQGNHPADNPMHTAGVGELKSCPGGEEEFKDDTPAPMHREDAEISETQNADVVENATSDQRPRRVSETDLMPNADTMEISAVNNGEENTGTKRSSGLVPRVPRRFPAKLKELLDTGILEDLPVQYIRGSRTRGSGESGLRGVIKGSGILCSCNSCKGTKVVTPNLFELHAGSSNKRPPEYIYLENGTSLRGVMNAWKNAALDSLDEAIRVAIGCSMIKKSTFCLNCKGRISEAGIGNSKVLCMLHELLVSKCSSSGSKSYGRVTKKDLSLHKLVFGENGLPEGTEVGYYVRGQQLLVGYKRGSGIFCTCCNSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHEFSISLSRGREISVSDNDDLCSICLDGGNLLCCDGCPRVFHKECVSLANIPKGKWFCKFCNNMLQKEKFVEHNANAVAAGRVAGVDPIEQITKRCIRIVNTQVDEMGGCALCRRHEFSRSGFGPRTVMLCDQCEKEFHVGCLREHDMDDLKEVPKGKWFCCHDCKRINSSLQKLVVHGEEELPHNVLTTIKEKYGRNGSACSKDPDIKWRLICGRRASSIEAGSLLSQALSIFHEQFDPIADAAGRDLLPDMVHGKSTREWDFGGMYCAILTISSQVVSAAAFRIFGKEVAELPLVATRSDCQGQGYFQTLFSCLEGLLGVLEVRSLVLPAAEGAESIWTNKFGFNKVTQEQRNNFRRDYQMVTFQGTLMLQKLVPR* 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18359042 18369317 - Vvi6g1116 Vvi6g1116 788693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1116 824 Pfam Tify domain binding domain 244 297 IPR032308 -
Vvi6g1116 824 Pfam Tify domain binding domain 401 448 IPR032308 -
Vvi6g1116 824 MobiDBLite consensus disorder prediction 31 167 - -
Vvi6g1116 824 MobiDBLite consensus disorder prediction 75 98 - -
Vvi6g1116 824 SUPERFAMILY FYVE/PHD zinc finger 460 513 IPR011011 -
Vvi6g1116 824 PANTHER AUTOIMMUNE REGULATOR 352 823 - -
Vvi6g1116 824 PANTHER AUTOIMMUNE REGULATOR 44 346 - -
Vvi6g1116 824 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 708 800 IPR016181 -
Vvi6g1116 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 552 614 IPR013083 -
Vvi6g1116 824 Gene3D - 654 824 - -
Vvi6g1116 824 ProSiteProfiles Zinc finger PHD-type profile. 465 510 IPR019787 -
Vvi6g1116 824 MobiDBLite consensus disorder prediction 54 74 - -
Vvi6g1116 824 MobiDBLite consensus disorder prediction 126 149 - -
Vvi6g1116 824 SMART PHD_3 467 508 IPR001965 -
Vvi6g1116 824 SMART PHD_3 555 612 IPR001965 -
Vvi6g1116 824 ProSitePatterns Zinc finger PHD-type signature. 468 507 IPR019786 -
Vvi6g1116 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 543 IPR013083 -
Vvi6g1116 824 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 662 822 IPR000182 GO:0016407
Vvi6g1116 824 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 44 346 - -
Vvi6g1116 824 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 352 823 - -
Vvi6g1116 824 CDD PHD1_AIRE 467 507 - -
Vvi6g1116 824 SUPERFAMILY FYVE/PHD zinc finger 546 612 IPR011011 -
Vvi6g1116 824 Pfam PHD-finger 468 509 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1116 Vvi8g1095 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14894 PF16135 TDBD 1.20E-15 No_clan Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1116 - - vvi:100260233 1627.45