Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1121 ATGGCCATGGCTTACAGAAGCCAAGATGGAACAGAGGAGTGGGGATATGTAGAAGTCAGACCCAAAGCACACATGTTTTGGTGGCTTTATAGAAGTCCGTACAGAGTTGAAAGCCCCTCCAAGCCATGGCCAATAATTCTTTGGTTGCAGGGAGGACCCGGTGCTTCAGGAGTTGGCATTGGGAATTTTCAAGAGATTGGGCCGCTTGGAACAGATTTGAAGCCCAGAAATTCTACATGGTTGAGAAAAGCAGATCTGTTGTTTGTGGATAACCCGGTTGGAACAGGATACAGCTTTGTGGAGGATACAAAGCTGTTGGTGAAGACTGATGTAGAGGCTGCAGTTGATTTGACTACATTGTTGAAGGAGATTTTCAACAGGAATGAGAGCCTCCAGCAGAGTCCTCTGTACATAGTGGCAGAGTCTTATGGAGGAAAATTTGCTGTCACTCTTGGATTAGCAGCTCTGGAAGCCATAGAAGCAGGAAACTTGAAGCTTAAACTTGGAGGAGTAGCATTGGGAGATAGTTGGATCTCCCCAGAAGATTTTGTGTTCTCATGGGGTCCTCTTCTCAAAGACGTGTCAAGGATTGATAACCAAGGCCTACAGAAATCAAACAGTTTAGCTAGGAAGATTAGGCAGCAGCTGATTGATGGTCAGTATGTTGATGCAACAAGTTCATGGAGTGAACTGGAAGGTGTGATCAGCCGAAGCAGTAATTCTGTGGACTTCTACAATTTCTTATTGGATTCCAACATGGATCCACTATCCTTGACTTCTGTGGAGCTAAGGGAACAATTTGCAAAGAGGAGATATTTGAGATATCTCGACTCCCTGAGGCTTTCTCCTGGTGGGGATGTTGATATTGACACCTTGATGAATGGTATCATTAAAGATAAGCTAAGGATTATTCCCAAGAACGTAAGTTGGGGAGGGCAGTCTGATCTTGTTTTCAGTACTCTCTCAGGTGACTTCATGAAACCAAGGATTAAAGAGGTTGATGAGCTGCTAGCAAAAGGGGTGAATGTGACCATATATAATGGACAACTTGATCTCATTTGTGCAACCATGGGGACTGAAGCATGGGTTGAGAAGCTCAAGTGGGATGGGCTGAAGGAATTTTTGAGCATGAAGAGAACTCCTCTGTATTGTGGGGGAGAGGGAGGCACAAAAGGGTTCACCAAGTCATACAAGAATCTGCATTTCTACTGGATACTTGGAGCTGGCCATTTTGTACCAGTGGATCAGCCCTGCATTGCATTGAACATGGTTGGTGGCATCACACACTCTCCAATGGCTTCCATCTCATGA 1311 44.93 MAMAYRSQDGTEEWGYVEVRPKAHMFWWLYRSPYRVESPSKPWPIILWLQGGPGASGVGIGNFQEIGPLGTDLKPRNSTWLRKADLLFVDNPVGTGYSFVEDTKLLVKTDVEAAVDLTTLLKEIFNRNESLQQSPLYIVAESYGGKFAVTLGLAALEAIEAGNLKLKLGGVALGDSWISPEDFVFSWGPLLKDVSRIDNQGLQKSNSLARKIRQQLIDGQYVDATSSWSELEGVISRSSNSVDFYNFLLDSNMDPLSLTSVELREQFAKRRYLRYLDSLRLSPGGDVDIDTLMNGIIKDKLRIIPKNVSWGGQSDLVFSTLSGDFMKPRIKEVDELLAKGVNVTIYNGQLDLICATMGTEAWVEKLKWDGLKEFLSMKRTPLYCGGEGGTKGFTKSYKNLHFYWILGAGHFVPVDQPCIALNMVGGITHSPMASIS* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18430615 18434643 + Vvi6g1121 Vvi6g1121 788698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1121 436 Pfam Serine carboxypeptidase 10 425 IPR001563 GO:0004185|GO:0006508
Vvi6g1121 436 Gene3D alpha/beta hydrolase 2 432 IPR029058 -
Vvi6g1121 436 PANTHER CARBOXYPEPTIDASE 3 430 - -
Vvi6g1121 436 SUPERFAMILY alpha/beta-Hydrolases 11 429 IPR029058 -
Vvi6g1121 436 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 3 430 IPR001563 GO:0004185|GO:0006508
Vvi6g1121 436 ProSitePatterns Serine carboxypeptidases, serine active site. 138 145 IPR018202 GO:0004185
Vvi6g1121 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 76 88 IPR001563 GO:0004185|GO:0006508
Vvi6g1121 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 89 99 IPR001563 GO:0004185|GO:0006508
Vvi6g1121 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 149 IPR001563 GO:0004185|GO:0006508
Vvi6g1121 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 400 413 IPR001563 GO:0004185|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1121 Vvi8g1094 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1121 K09646 - vvi:100267109 875.544