Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1131 ATGTTCTGGCCTCCGCCTGCGGTGGCTTCTGGGTTTCCGGCGACGCTGACCCTTGAGAGGGCTTTTCCGTTGAACCAGCGGGTTGAATTGGATGAGCTCAAAGCTCGGGACAGGGTCCGGCATGGCAGGTTTTTGCAGTCTTCAGTGGGTGTCGTGGATTTTCCGGTTGAGGGCACCTACGATCCGTATCGTGTTGGGCTTTATTTTACAAGAGTGCTTTTGGGTTCTCCTCCAAAAGAATTCTATGTTCAGATTGACACGGGAAGCGATGTATTGTGGGTCAGTTGCGGTTCTTGCAACGGCTGCCCACAATCCAGTGGACTCCATATTCCGCTTAATTTCTTTGATCCTGGGAGTTCATCAACAGCTTCGCTGATATCATGTTCAGACCAAAGATGCAGTCTAGGAGTACAGTCTTCAGATGCTGGCTGTTCAAGTCAGGGCAATCAGTGCATTTACACGTTTCAGTACGGGGATGGCAGTGGGACATCAGGCTATTATGTATCAGATTTGTTGAATTTTGATGCGATTGTTGGATCATCTGTGACTAATTCTTCAGCTTCAATTGTCTTTGGGTGTAGCATCTCACAGACTGGGGACTTGACAAAGTCAGACCGGGCAGTTGATGGGATTTTTGGGTTTGGTCAACAGGATATGTCTGTTATCTCACAAATGTCTTCACAGGGAATAACACCAAAAGTGTTTTCACATTGCTTGAAAGGAGATGGTGGTGGCGGTGGTATATTGGTTCTTGGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAGCCCCATTATAATTTGAATTTGCAGAGCATCTCTGTCAATGGGAAATCGTTAGCCATTGACCCAGAGGTGTTTGCAACATCAACCAACCGAGGAACCATTGTTGATTCTGGGACAACTTTGGCATACCTTGCAGAAGAAGCTTATGATCCTTTTGTCAGTGCAATCACAGAAGCTGTATCGCAATCTGTACGCCCTCTTCTCTCCAAAGGAACCCAGTGTTATCTAATCACATCAAGTGTCAAGGGTATATTTCCTACAGTCAGTTTGAACTTTGCTGGTGGTGTATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAATAACAATTTTAGGAGATCTTGTTCTAAAAGACAAAATCTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTGTTCAATGTCTGTGAATGTGTCCACTAGGAGTAGTACTGGAAAAAGCGAATTTGTCAACGCAGGACAGCTGAGTGAGAGTAGTTCACCGAGGACTGTGTTTTACAACAAGCTAATACCAGGCAGCATTGTGGCTTTGCTGGTGCATCTATCAGTGTTGTACACTTCCCTGTTTTTATAA 1455 44.81 MFWPPPAVASGFPATLTLERAFPLNQRVELDELKARDRVRHGRFLQSSVGVVDFPVEGTYDPYRVGLYFTRVLLGSPPKEFYVQIDTGSDVLWVSCGSCNGCPQSSGLHIPLNFFDPGSSSTASLISCSDQRCSLGVQSSDAGCSSQGNQCIYTFQYGDGSGTSGYYVSDLLNFDAIVGSSVTNSSASIVFGCSISQTGDLTKSDRAVDGIFGFGQQDMSVISQMSSQGITPKVFSHCLKGDGGGGGILVLGEIVEEDIVYSPLVPSQPHYNLNLQSISVNGKSLAIDPEVFATSTNRGTIVDSGTTLAYLAEEAYDPFVSAITEAVSQSVRPLLSKGTQCYLITSSVKGIFPTVSLNFAGGVSMNLKPEDYLLQQNSIGDAAVWCIGFQKIQGQGITILGDLVLKDKIFVYDLAGQRIGWANYDCSMSVNVSTRSSTGKSEFVNAGQLSESSSPRTVFYNKLIPGSIVALLVHLSVLYTSLFL* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18652671 18658561 + Vvi6g1131 Vvi6g1131 788708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1131 484 Gene3D Acid Proteases 254 433 IPR021109 -
Vvi6g1131 484 SUPERFAMILY Acid proteases 63 430 IPR021109 -
Vvi6g1131 484 Pfam Xylanase inhibitor N-terminal 68 252 IPR032861 -
Vvi6g1131 484 Gene3D Acid Proteases 46 253 IPR021109 -
Vvi6g1131 484 PRINTS Pepsin (A1) aspartic protease family signature 74 94 IPR001461 GO:0004190|GO:0006508
Vvi6g1131 484 PRINTS Pepsin (A1) aspartic protease family signature 300 311 IPR001461 GO:0004190|GO:0006508
Vvi6g1131 484 PRINTS Pepsin (A1) aspartic protease family signature 398 413 IPR001461 GO:0004190|GO:0006508
Vvi6g1131 484 CDD pepsin_A_like_plant 68 426 IPR034161 -
Vvi6g1131 484 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 443 - -
Vvi6g1131 484 PANTHER ASPARTYL PROTEASES 10 443 IPR001461 GO:0004190|GO:0006508
Vvi6g1131 484 Pfam Xylanase inhibitor C-terminal 270 422 IPR032799 -
Vvi6g1131 484 ProSiteProfiles Peptidase family A1 domain profile. 68 422 IPR033121 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1131 Vvi8g1086 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1131 - K00924 vvi:100255070 951.814