Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1132 ATGTCTCGCCGTGGTGGTGCTGGTGGGCGGAGATCGGATTCTCGCCGCGATCAGACGTCTCAGGCTCCTGGTCCATCGTTTAACAGAGGCGGGGAAGGAGGGAGGGGCGGGGGAGGAGGGAGGGGCGGGGGAGGAGGGAGAGGTGGGGGAGGAGGGAGAGGCAGGGGTTCTGGCGCCGCTGCTGCCGGTGGTTCAAGACCTGCTTCGGAGCCTCACTCGCCGGCGGCTTTTCCGCCATTGGCTTCTCCATCGCCGTCTGCTTCAACCTCTACAGCGTCTCTGAGCCAAAAGTTCGATCAGAGTCTCACATTGCAGTCTCCGGCTCCGGTTCGCCGTCAGCCTTCTGATCCTGTTCGACCTCAGCCTCAGCCTCATCCTCAGCCTCCCCCTCCGGTTCAGGCTCAGCCTACGCCTCCTGTTCCGACTCAGCCTCAGCCTTCGTCTTCGTATCAGGCTTCGTCTTCATCTCAGGCAACAGGGGTTGAGGTGCCGCCTTCGACGTCGAAGGCGATTACGTTCCCAAGGAGGCCGGGATATGGAACAGTAGGAAGAAAATGTAAGGTTCGAGCAAATCATTTTCAAGTACAAGTGGATGATAGAGAATTCTGTCATTATGATGTTACAATAACTCCTGAGGTAATGTCAAAGACTCTAAACCGGGAAATAATAAAGCAACTTGTTGACTTATACAAGGTGTCACATTTGGGTAAACGTAGTCCGGCATATGATGGCAGTAAGAGCCTGTATACAGCAGGTCCATTGCCCTTTACTTCAAAAGAGTTTGTGGTTAAGCTAGTTAAAACAGATGATGGGGCTGGTCCAAGAAGGGAACGTGAATTTAAGGTGGCTATTAAATTGGCTTCCAAGGGTGATTTATATCAGCTACAACAGTTTTTGTGTGGCAGACAACTCAGTGCTCCCCAAGAGACCATACAAATTCTTGATGTGGTTCTTAGAGCATCACCATCTGAAAAATATACTGTTGTGGGGCGGTCATTTTTCTCTACTCAATTGGGGAGAAAAGGTGAGCTTGGTGATGGCTTAGAGTATTGGAGAGGCTACTATCAAAGTCTTCGCCCAACCCAAATGGGACTCTCCTTTAATATTGATGTGTCAGCGAGATCTTTCTATGAGTCTATTCTTGTGACTGACTTTGTTGCAAAACATTTGAAGCTTAGAGATGTATCAAGAGCTCTGTCTGATCAGGACCGTATTAAGGTAAAGAAAGCCTTGAAGGGAGTTAAGGTACAACTCACTCATAGGGAGTTTGCTAAACGTTACAAAATTGCTGGTGTCTCAAGTCAACCAACGAACCAATTGATGTTTACCCTTGATGACGAGGCAACAAGAGTGTCAGTTGTTCAATACTTCCGCCAAAAGTACAATATTGTACTCAAATACCCCTCTTGGCCTTCTCTCCAAGCTGGGAGTGACTCGAAACCTATTTATTTACCCATGGAGGTCTGCAAGATTGTTGAGGGCCAAAGATACACAAGGAAATTGAATGATAGGCAGGTAACTGCTCTGTTAAGAGCAACATGTCAGCGTCCTAGTGAGAGGGAAGGAAACATTCAAGAGATGGTCAGAAAAAATAATTTCAGCACAGACAGAGTTGTAAGGGATGAATTTGGCATTCGTATAAATGAGGAACTTACATTGGTTGATGCCCGTGTTTTGCCGCCTCCAATGCTTAAGTATCATGACAGTGGGCGAGAAGCAAAGGTTGATCCACGGGTGGGGCAGTGGAACATGATAGACAAGAAAATGGTAAACGGTGGAACAGTGCAATTCTGGACATGTTTGAACTTCTCTTTTAGAGTACATCAAGATTTGCCATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAAATTGAGAAGGTTCTAGTAGACGTTCACAAGCAGTCTATGGCCAAACTTGCAAGCATGGGACAAAATGGGAAACAACTCCAGCTGCTGATAATTATTCTACCTGATGTAACTGGGTCATATGGTAAAATCAAACGAATATGTGAAACGGAGTTGGGAATTGTTTCGCAATGCTGTCAGCCTTCCCAAGCTTCAAAACTTAATAAGCAGTATTTTGAAAATGTTGCACTGAAGATAAATGTGAAGGTTGGGGGCCGGAACACTGTACTTTTTGATGCAATTCAAAGGAAAATTCCTCTGGTGAGTGATCTTCCAACAATAATCTTTGGTGCTGATGTTACCCACCCTCAACCAGGGGAAGATTCTAGCCCATCAATAGCTGCGGTGGTGGCTTCAATGGATTGGCCTGAAGTTACCAAATACAGGGGGCTGGTGTCTGCTCAGCACCACCGTGAAGAAATTATTCAGGATCTCTATAAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGATTCTATAAGAAAGGCCTGTGCATCACTGGAGGAGGGGTATCTACCACCAGTTACATTTGTTGTGGTGCAGAAAAGGCACCATACACGCTTTTTCCCTTCAGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAGGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCTCAATAGCCATGCTGGAATTCAGGGCACCAGCAGGCCAACACATTATCATGTGTTATATGATGAGAACAAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACACGTATGCAAGGTGCACCCGCTCTGTCTCCATAGTTCCCCCTGCTTATTATGCCCATTTAGCAGCCTTCCGGGCTCGATATTATATTGAGGGTGATACATCTGATTCTGGATCTGGAAGTGGGGACAGGAGTACAAGGGAGAGGAACCTGGAGGTTCGGCTCCTGCCTGCAGTCAAAGAAAATGTTAAAGACGTGATGTTTTACTGCTGA 3099 46.05 MSRRGGAGGRRSDSRRDQTSQAPGPSFNRGGEGGRGGGGGRGGGGGRGGGGGRGRGSGAAAAGGSRPASEPHSPAAFPPLASPSPSASTSTASLSQKFDQSLTLQSPAPVRRQPSDPVRPQPQPHPQPPPPVQAQPTPPVPTQPQPSSSYQASSSSQATGVEVPPSTSKAITFPRRPGYGTVGRKCKVRANHFQVQVDDREFCHYDVTITPEVMSKTLNREIIKQLVDLYKVSHLGKRSPAYDGSKSLYTAGPLPFTSKEFVVKLVKTDDGAGPRREREFKVAIKLASKGDLYQLQQFLCGRQLSAPQETIQILDVVLRASPSEKYTVVGRSFFSTQLGRKGELGDGLEYWRGYYQSLRPTQMGLSFNIDVSARSFYESILVTDFVAKHLKLRDVSRALSDQDRIKVKKALKGVKVQLTHREFAKRYKIAGVSSQPTNQLMFTLDDEATRVSVVQYFRQKYNIVLKYPSWPSLQAGSDSKPIYLPMEVCKIVEGQRYTRKLNDRQVTALLRATCQRPSEREGNIQEMVRKNNFSTDRVVRDEFGIRINEELTLVDARVLPPPMLKYHDSGREAKVDPRVGQWNMIDKKMVNGGTVQFWTCLNFSFRVHQDLPSGFCRELVNMCVSKGMVFNPNPLLPIQSAHPNQIEKVLVDVHKQSMAKLASMGQNGKQLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPSQASKLNKQYFENVALKINVKVGGRNTVLFDAIQRKIPLVSDLPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQHHREEIIQDLYKTTADPHKGVTHGGMIRELLIAFRRSTGYKPSRIIFYRDGVSEGQFSQVLLHEMDSIRKACASLEEGYLPPVTFVVVQKRHHTRFFPSDHRSRDLTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADILQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDTSDSGSGSGDRSTRERNLEVRLLPAVKENVKDVMFYC* 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18665349 18674795 - Vvi6g1132 Vvi6g1132 788709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1132 1032 MobiDBLite consensus disorder prediction 146 166 - -
Vvi6g1132 1032 SMART DUF1785_2 327 379 IPR014811 -
Vvi6g1132 1032 SMART Piwi_a_2 673 993 IPR003165 GO:0003676
Vvi6g1132 1032 MobiDBLite consensus disorder prediction 113 145 - -
Vvi6g1132 1032 SMART PAZ_2_a_3 384 513 IPR003100 GO:0005515
Vvi6g1132 1032 SUPERFAMILY Ribonuclease H-like 669 993 IPR012337 -
Vvi6g1132 1032 Pfam Piwi domain 675 992 IPR003165 GO:0003676
Vvi6g1132 1032 CDD Piwi_ago-like 541 992 IPR045246 -
Vvi6g1132 1032 ProSiteProfiles PAZ domain profile. 380 493 IPR003100 GO:0005515
Vvi6g1132 1032 MobiDBLite consensus disorder prediction 82 110 - -
Vvi6g1132 1032 Pfam Mid domain of argonaute 577 655 IPR032473 -
Vvi6g1132 1032 ProSiteProfiles Piwi domain profile. 673 993 IPR003165 GO:0003676
Vvi6g1132 1032 MobiDBLite consensus disorder prediction 1 17 - -
Vvi6g1132 1032 Gene3D paz domain 374 497 - -
Vvi6g1132 1032 PANTHER PROTEIN ARGONAUTE 1A 147 1007 - -
Vvi6g1132 1032 Pfam PAZ domain 405 509 IPR003100 GO:0005515
Vvi6g1132 1032 Pfam N-terminal domain of argonaute 184 318 IPR032474 -
Vvi6g1132 1032 MobiDBLite consensus disorder prediction 1 178 - -
Vvi6g1132 1032 Gene3D - 742 1032 IPR036397 GO:0003676
Vvi6g1132 1032 Pfam Argonaute linker 1 domain 329 378 IPR014811 -
Vvi6g1132 1032 SUPERFAMILY PAZ domain 376 533 IPR036085 GO:0005515
Vvi6g1132 1032 Gene3D - 558 735 - -
Vvi6g1132 1032 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 147 1007 - -
Vvi6g1132 1032 CDD PAZ_argonaute_like 382 492 - -
Vvi6g1132 1032 Pfam Argonaute linker 2 domain 519 566 IPR032472 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1132 Vvi8g1083 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1132 K11593 - vvi:100258447 1819.28