Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1163 ATGGACTTGGACCGTGAGTCTTCAGCTTCATCATCTTCACCAACATCCTCTCCTTCTCGGGCAAACCCTGTTTCTTCCGACTCTCGGTGCCCTTCAAGGTGCATTCCGCACAAACGGAAAACTGGAAGAAAGAAGTTCCGGAAGACGCGACACCCGATATACAGGGGCGTGCGCCAAAGAAATGAGAACAAATGGGTGAGTGAAGTGCGCGAGCCCAGTAAGAAGTCCAGGATATGGCTAGGCACCTTTCCTACTCCGGAAATGGCGGCTAGGGCGCATGATGCGGCTGCCCTAGCGCTCAGAGGCCACTTTGCTTCCCTCAATTTTCCCGATTCGGCTTGGCGCCTTCCACGCGCCAGGTCATCCTCCGCAGGAGACGTACAGTTCGCGGCGATTCAGGCCGCTAAGGCTTTTCAGCAACCTCCATCATCGTCATCTTCCACACCTTTTGTAATGGATAATATGTCAGCAGGGGAGAAAGCCGGAGATGGTTTCCGGACAGCGTTCGTGGATGAGGAGGCAATGTTTAATATGCCAGGTTTAATTGACAGCATGGCCGAGGGTCTGCTTCTTACTCCACCTGCTATGTGTGAAGGCTTCAGTTGGGACGATGCAGTTTCACACATTGACTTGTCTTTGTGGAATCATGATTTCCTCTTTTTTCTAAATGTATGGCTTTGCCACTCGAACCCATTCAAAGAATTTACACTTGGGGCCTTCATGGGTTCCACTAAATTTAAACTAGAATTCGGGATTTTGTGTTGGGCACTTCAAGTTGAGACTAAAGGGTTATGGTAG 798 50.13 MDLDRESSASSSSPTSSPSRANPVSSDSRCPSRCIPHKRKTGRKKFRKTRHPIYRGVRQRNENKWVSEVREPSKKSRIWLGTFPTPEMAARAHDAAALALRGHFASLNFPDSAWRLPRARSSSAGDVQFAAIQAAKAFQQPPSSSSSTPFVMDNMSAGEKAGDGFRTAFVDEEAMFNMPGLIDSMAEGLLLTPPAMCEGFSWDDAVSHIDLSLWNHDFLFFLNVWLCHSNPFKEFTLGAFMGSTKFKLEFGILCWALQVETKGLW* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19216515 19217622 - Vvi6g1163 Vvi6g1163 788740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1163 265 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vvi6g1163 265 Pfam AP2 domain 52 103 IPR001471 GO:0003700|GO:0006355
Vvi6g1163 265 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Vvi6g1163 265 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F-LIKE 6 215 - -
Vvi6g1163 265 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Vvi6g1163 265 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Vvi6g1163 265 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 215 IPR045277 GO:0003700
Vvi6g1163 265 CDD AP2 52 112 IPR001471 GO:0003700|GO:0006355
Vvi6g1163 265 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vvi6g1163 265 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vvi6g1163 265 MobiDBLite consensus disorder prediction 1 45 - -
Vvi6g1163 265 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1163 Vvi8g1030 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14899 PF00847 AP2 4.60E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1163 - - vvi:100248181 388.652