Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1164 ATGGAATCGGAGCGTGATCAGTCTTCACCCTCATCCTCCTCTTCCTCTTCTCAAACCAAATGCTCAATTTCTTCGTCCCCTGTGCATAAGCGGAAAGCAGGGAGGAAGAAGTTTCGGGAGACTCGCCACCCGGTATACAGGGGCGTGCGCCAAAGAAATGGCAATAGATGGGTATGCGAAGTGCGGGATCCCAAAACCAAGTCCAGGATATGGCTTGGGACTTTTTCCACTCCCGAAATGGCGGCTAGGGCGCATGATGTGGCCGCCCTAGCATTCAGAGGCAATTTTGCTGCGCTCAATTTCCCCGACTCCGCGTCTCGCCTGCCGCGCGCCAAGTCATCTTCAGCTGGGGACATACAGGTGGCGGCCCTTGCGGCTGCCATGGCTTTTCACTCGCCTCAGTTAGAGAGCCGAAAAAAGGTTGTGGGAGTTGCATTGGAGGATTCTGAGAGCTCAGAGGGCGCTCCATATGGTTCGAGCACGGTGTTCATGGATGAGGAGGCATTGTTTAATATGCCAGGTTTGATTAACAGCATGGCAGAAGGTTTGCTCCTTGCGCCGCCAACTATGCTTGGAGGATTCATACACTGCCTAGTGTTCACATTTTCACTGCTTCATCAATTTTATTTTTTATTTCCGTCACTTTCTGATGACAGCGGCAAGGATTTCCATTGTGGTTGTAACAAGTTGAATATAAAAATATGA 705 50.5 MESERDQSSPSSSSSSSQTKCSISSSPVHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVRDPKTKSRIWLGTFSTPEMAARAHDVAALAFRGNFAALNFPDSASRLPRAKSSSAGDIQVAALAAAMAFHSPQLESRKKVVGVALEDSESSEGAPYGSSTVFMDEEALFNMPGLINSMAEGLLLAPPTMLGGFIHCLVFTFSLLHQFYFLFPSLSDDSGKDFHCGCNKLNIKI* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19254219 19255122 - Vvi6g1164 Vvi6g1164 788741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1164 234 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vvi6g1164 234 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vvi6g1164 234 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Vvi6g1164 234 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vvi6g1164 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 191 IPR045277 GO:0003700
Vvi6g1164 234 MobiDBLite consensus disorder prediction 29 43 - -
Vvi6g1164 234 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vvi6g1164 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F-LIKE 9 191 - -
Vvi6g1164 234 MobiDBLite consensus disorder prediction 1 26 - -
Vvi6g1164 234 MobiDBLite consensus disorder prediction 1 43 - -
Vvi6g1164 234 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Vvi6g1164 234 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Vvi6g1164 234 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1164 Vvi8g1028 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14900 PF00847 AP2 1.20E-13 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1164 - - vvi:100265477 350.132