Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1165 ATGGAAGGCGACAATGGTGGGCAGAAAGTGGAAAACCCTAATCCTAACCCTAACAAGACAAAGGTGGTGGTGATAATGGGAGCCACGGGTTCAGGAAAATCAAAGCTGGCCATTGATTTGGCATCTCACTTCCCAATCGAGATCATCAACTCTGATTCCATGCAGGTCTACCAAGGCCTTGACGTTCTCACCAACAAGGTTCCCCTTCACGAGCAGAATGGAGTGCCTCATCATCTTTTGGGTACAATTAGCTCAAATGTGGAATTTACCTCTAAGGATTTTCGGGATTCTGCAATACCTCTCATTGATGACATAATTTCACGCAACAACTTGCCAGTGCTTGTTGGAGGTACAAATTATTATATTCAGGCTCTTGTGAGTCCATTCCTTCTAGATGATTCAGCAGAAGAGATGGATGAAAGCAGTGTACATGACCATCCTGGAGGCAACAATCGAAATTATAAACTTGATTCCAAGAGAGGTGGTTCCTGTTCTGGCTATGATCGCCTTAAAGATCTTGATCCAGTTGCAGCAAACAGAATTCATCCAAATGACCATAGAAAAATCAATCAGTACCTTGGTTTGTATGCACGCACTGGTGTTCTCCCCAGCAAACTATTCCAGGGAAAGGCTATGGAGAACTGGGGTCGAGTTGATAATTTCAAATACAGATGCTGTTTTATATGTGTGGATGCAGCTCTCCCTATACTGGATGGATATGTGGGACAAAGAGTGGACAGCATGATTGATGCTGGTTTACTTGATGAAGTGTATGACATCTACAGTCTAAATGCAGATTATACTAGAGGTCTACGGCAGGCTATTGGTGTCCGTGAATTTGAGGATTTTCTGAAAGTACTCCTTTCAGAAGGTGGACATGATAAAGAAAATGGTTTGCTGAAAGGGAATGTGAGGGAAATTTTGAAGTCTTCCAACAATGATCAGCACAACATTCTACTACAAGAGGCCATTGAAAGAGTAAAAGCAAACACCAGAAGACTTGTTCGTCGTCAAAAAAGGAGGTTTAATCGGCTACAATCTTTGTTTGGATGGGATATACACTATGTTGATGCCACGGAGTCCTCATCATGCAATCCCAGTGCTTCTTGGGCAGCAGATGTGGTTGAACCCTCTGTGAAAATAATCAGATCTTTCCTTAGAGATGATGCAAGTTCAATACCCGATTTGGAGGGCAGAAATGGTGCAGAAGGACTGAAATCAATCAACAGGGACTTGTGGACTCAATACATCTGCAAGGCTTGTGGCGATAGGGTGCTTAGAGGACTACATGAATGGGAACAACACAAACAGGGCCGAGGACATAGAAAACGAATTTCTCGGTCTCGGAACTTGCAGAGTTCTTGCTTAACAGAACAGCAGCAGCAGCAACTCCTTAGGCATGAGGCTAGCAAGCCAAGAAAGTAG 1425 43.51 MEGDNGGQKVENPNPNPNKTKVVVIMGATGSGKSKLAIDLASHFPIEIINSDSMQVYQGLDVLTNKVPLHEQNGVPHHLLGTISSNVEFTSKDFRDSAIPLIDDIISRNNLPVLVGGTNYYIQALVSPFLLDDSAEEMDESSVHDHPGGNNRNYKLDSKRGGSCSGYDRLKDLDPVAANRIHPNDHRKINQYLGLYARTGVLPSKLFQGKAMENWGRVDNFKYRCCFICVDAALPILDGYVGQRVDSMIDAGLLDEVYDIYSLNADYTRGLRQAIGVREFEDFLKVLLSEGGHDKENGLLKGNVREILKSSNNDQHNILLQEAIERVKANTRRLVRRQKRRFNRLQSLFGWDIHYVDATESSSCNPSASWAADVVEPSVKIIRSFLRDDASSIPDLEGRNGAEGLKSINRDLWTQYICKACGDRVLRGLHEWEQHKQGRGHRKRISRSRNLQSSCLTEQQQQQLLRHEASKPRK* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19262710 19283747 - Vvi6g1165 Vvi6g1165 788742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1165 474 MobiDBLite consensus disorder prediction 137 157 - -
Vvi6g1165 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 128 IPR027417 -
Vvi6g1165 474 Gene3D - 152 210 - -
Vvi6g1165 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 19 390 IPR039657 -
Vvi6g1165 474 Hamap tRNA dimethylallyltransferase [miaA]. 22 387 IPR018022 GO:0008033
Vvi6g1165 474 Gene3D Classic Zinc Finger 411 454 - -
Vvi6g1165 474 TIGRFAM miaA: tRNA dimethylallyltransferase 22 360 IPR018022 GO:0008033
Vvi6g1165 474 Pfam IPP transferase 55 343 - -
Vvi6g1165 474 Gene3D - 19 406 IPR027417 -
Vvi6g1165 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 19 390 - -
Vvi6g1165 474 MobiDBLite consensus disorder prediction 137 153 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1165 K00791 - vvi:100251208 951.429