Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1176 ATGGCTTCTGGGCCATCCATTGACACACAGTCCAAGCCCTTCTCTGTCCTCTTTGTGTGCCTTGGCAACATCTGCAGAAGCCCAGCTGCTGAGGGTGTCTTCACTGATGCTGTCAAGAAGAGAGGGCTGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAGGGTAATCTAGCGGACCCAAGAATGAGGGCTGCTTCAAAAAGGCGTGGGATTGAGATAACTTCCATCTCAAGGCCAATCCAGCCATCTGATTTTAGAGATTTTGATCTCATCCTTGCAATGGACAAGCAAAATAGAGATGATATAATGGAGGCTTTTGATAGGTGGAGATTTAGAGAAACCCTCCCTGCTGATGCACATAAAAAGGTCAAGTTAATGTGTTCCTATTGTAAGAAACATGATGAAACTGAAGTCCCAGATCCTTACTACGGGGGACCGCAAGGTTTTGAGAAGGTTCTGGATTTACTTGAAGATGCTTGTGAATCATTATTAGACAGCATTTTGGCAGAGAACAGTCATCTTTTGGATTCTTAG 549 43.9 MASGPSIDTQSKPFSVLFVCLGNICRSPAAEGVFTDAVKKRGLDSKFKIDSAGTINYHEGNLADPRMRAASKRRGIEITSISRPIQPSDFRDFDLILAMDKQNRDDIMEAFDRWRFRETLPADAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDLLEDACESLLDSILAENSHLLDS* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19441284 19446238 - Vvi6g1176 Vvi6g1176 788753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1176 182 Pfam Low molecular weight phosphotyrosine protein phosphatase 16 169 IPR023485 -
Vvi6g1176 182 PRINTS LMW phosphotyrosine protein phosphatase signature 16 33 IPR017867 GO:0004725|GO:0006470
Vvi6g1176 182 PRINTS LMW phosphotyrosine protein phosphatase signature 59 75 IPR017867 GO:0004725|GO:0006470
Vvi6g1176 182 PRINTS LMW phosphotyrosine protein phosphatase signature 143 158 IPR017867 GO:0004725|GO:0006470
Vvi6g1176 182 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 6 177 - -
Vvi6g1176 182 Gene3D - 3 177 - -
Vvi6g1176 182 SMART LMWPc_2 14 171 IPR023485 -
Vvi6g1176 182 CDD LMWPTP 15 170 - -
Vvi6g1176 182 SUPERFAMILY Phosphotyrosine protein phosphatases I 12 172 IPR036196 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1176 K25307 - vvi:100253402 372.474