Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1177 ATGGGTACATTATCTGCTGGTACTAGTGAAATTGTTGAATCAGCAGAAGAGCTAGATTCAGAATTAAAAATGAATGACATAGCTGGAAGGCATCGTTTGCTGAAGCCAGGGCAAAATTATTCCATAGAAGATGATATTAATCAACTTTTTGAGGCAATTGACATCAGATGTTCAGGTAGGGTTTCGGGTACATCACACCAAGTTAGCAAAGATGCTTTCCGGAAGAGTGCAATGAAAAGACCAATTAGAGTCAGTTCTCCTCAATCATCAGGAATAGGGATTTCAGAGTCTGTAAGTTTGAAGCAGGCACTAAGGGGATTATGCATCTCTCAGGCGTCAGAGATGGCTGCTATGAAACGATTGTCGAAGCCAGCAGGTTTGTCGGGTTCCTCTGAAGCAGGAACTATCAAAAGATTGTATAGGGCAGTGGTAGTTGATGCCAGTGAATCCGGTCTTCCCTTTAATGAAGGAAAGGGGAATTTGGTAGAAATTTCGCTTGTCCCAGAAAAAAGCACATCAAGTTTTTATGAGAAGGTGCCAGAGTCCCTGCAAAAGTCAAAGGCAGAGTTGGAGCAGAATGGAAAACGGAAACCAGTACATTCTTTGCTCAGTGTTGATGCTGGCGAGCGACTACCAAAGCTAGAGAAGATTGTTCCTACCTTGAATGAAGTTGCAAGCAAAACATCAACACTAGACAAGGGGCAGAAAGTCTTCAGGAGCAAGAACTTTGTTAAGAAGAAAGTAAAGCTAGATTCAGCTTTGGCTTCTACCCCTGCTGGTTCCAATCCACTTAGTTCAAGTGTTGTGGACTCTGATGCAAGTAAACCAGGTTTCGGTTCAAATTGCAGTAACAGAACTAGAGGTGTTACAAAAGGTGATGAGAGATCAAGATCTAGTGAAAAGGGGGAGTTCTCCCAAAGCTCAAAAAGTAGCATTGGGCAATATAGCAGTAGCACAAGTATTAGTGAGGAAAGCAATGTAAGTGGGTCTAGTCGTAGTGGGAACAGGCCTCACATGTCCAAAGACTTGAGATGGGAGGCCATTCACCATGTTCAGAAGCAGCATGAGACTTTCGGTTTGAGAAACTTCAAGTTGCTCAAGAGGCTTGGTTGTGGGGACATTGGGACTGTTTATCTTGTTGAGCTAACCGGCACAAACTGCCTATTTGCTTTGAAAGTGATGGACAATGAGTTTCTGGCAACCAGGAAGAAAATGCCTAGAGCCCAAACTGAAAGAGAAATACTGCAAATGCTGGATCATCCATTTCTCCCCACGTTATATGCCCATTTCACAACAGATAAGCTCTCATGCTTGGTTATGGAATATTGTCCAGGTGGAGATCTGCATGTGCTCCGGCAGAAGCAACCTAGCAGGAGTTTCTCTGAACAAGCTGCCCGGTTTTATGCTGCTGAAGTCCTCCTTGCATTGGAATACCTGCACATGCTTGGAGTTGTGTACCGAGACCTAAAACCTGAAAACATCCTGGTTCGGGAAGACGGTCACATCATGCTGTCAGATTTTGACTTGTCTCTCAGATGTGCCGTTAATCCGATGCTGCTCAAATCAGCTTCCCCAGTTCTAAAATCCGACCTTGCCACTCAGGTCACTCCTCTCCCACAGCTTGTAGCCGAGCCTACCAGTGCCCGATCCAACTCTTTCGTGGGAACTCATGAGTACTTGGCCCCTGAGATAATCAAGGGGGAGGGTCATGGGAGTGCAGTCGATTGGTGGACCTTTGGGATATTTCTATATGAGCTATTATATGGAAAGACACCCTTCAAGGGTTCAGGAAATGAGGATACATTAGCCAGTGTGGTCTCACATAGCCTCAAGTTCCCAGAAAGCCCAATGGTTAGTTTCCATGCAAGAGATTTGATCAGAGGGCTGTTAGTAAAGGAGCCAGAGAATCGGTTAGGATCAGTGAAAGGGGCGACCGAGATCAAGCAGCACTCGTTCTTTGAGGGCTTAAACTGGGCTCTGATACGCTGTGCGATACCCCCAGAAATGCCTAAATTGTGTGATGCTGGAACCGGCAGCACTTGTGTGGAGTTTGAGCTCTTCTAG 2064 45.35 MGTLSAGTSEIVESAEELDSELKMNDIAGRHRLLKPGQNYSIEDDINQLFEAIDIRCSGRVSGTSHQVSKDAFRKSAMKRPIRVSSPQSSGIGISESVSLKQALRGLCISQASEMAAMKRLSKPAGLSGSSEAGTIKRLYRAVVVDASESGLPFNEGKGNLVEISLVPEKSTSSFYEKVPESLQKSKAELEQNGKRKPVHSLLSVDAGERLPKLEKIVPTLNEVASKTSTLDKGQKVFRSKNFVKKKVKLDSALASTPAGSNPLSSSVVDSDASKPGFGSNCSNRTRGVTKGDERSRSSEKGEFSQSSKSSIGQYSSSTSISEESNVSGSSRSGNRPHMSKDLRWEAIHHVQKQHETFGLRNFKLLKRLGCGDIGTVYLVELTGTNCLFALKVMDNEFLATRKKMPRAQTEREILQMLDHPFLPTLYAHFTTDKLSCLVMEYCPGGDLHVLRQKQPSRSFSEQAARFYAAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLSDFDLSLRCAVNPMLLKSASPVLKSDLATQVTPLPQLVAEPTSARSNSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLYGKTPFKGSGNEDTLASVVSHSLKFPESPMVSFHARDLIRGLLVKEPENRLGSVKGATEIKQHSFFEGLNWALIRCAIPPEMPKLCDAGTGSTCVEFELF* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19447228 19451253 - Vvi6g1177 Vvi6g1177 788754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1177 687 Gene3D Phosphorylase Kinase; domain 1 362 673 - -
Vvi6g1177 687 MobiDBLite consensus disorder prediction 288 302 - -
Vvi6g1177 687 SUPERFAMILY Protein kinase-like (PK-like) 336 670 IPR011009 -
Vvi6g1177 687 Gene3D Transferase(Phosphotransferase) domain 1 447 671 - -
Vvi6g1177 687 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 245 687 - -
Vvi6g1177 687 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 3 238 - -
Vvi6g1177 687 MobiDBLite consensus disorder prediction 303 336 - -
Vvi6g1177 687 MobiDBLite consensus disorder prediction 254 338 - -
Vvi6g1177 687 Pfam Protein kinase domain 364 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1177 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Vvi6g1177 687 CDD STKc_phototropin_like 363 676 - -
Vvi6g1177 687 PANTHER FLIPPASE KINASE 1-RELATED 3 238 - -
Vvi6g1177 687 PANTHER FLIPPASE KINASE 1-RELATED 245 687 - -
Vvi6g1177 687 ProSiteProfiles Protein kinase domain profile. 363 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1177 687 MobiDBLite consensus disorder prediction 255 287 - -
Vvi6g1177 687 SMART serkin_6 363 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76688 PF00069 Pkinase 1.90E-60 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1177 - - vvi:100258540 1134.01