Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1179 ATGCTAGACCACCCCTTCCTCCCCGCGCTCTACGCCACCATCGACTCTCCGAAGTGCTCCTGCCTCCTCACCGAGTTCTGCCCTGGCGGCGACCTCCACGTTCTCCGGCAGCGCCAGCCGGCGAAGCGCTTCCACGAATCCGCCGTCAGGTTCTATGCATCAGAGGTGGTGGTGGCCCTGGAGTATGTTCACATGATGGGGATCGTCTACCGTGATCTCAAGCCTGAAAATGTGCTAGTTCGATCTGATGGCCACATCATGCTCACTGATTTTGACCTATCGTTAAAATGTGACCATTCCACATCAGTTGCTCAGATCATTTCTGATCAAAATCCACCCCTTGCACTCCCACCAAGCCATCATGGGGGGCCTGAGTTTGTGGCTGAGCCAGTTGATGTTCGATCAATGTCATTTGTTGGGACACATGAGTATTTGGCCCCTGAGATTGTTTCTGGGGAGGGCCATGGCAGTGCTGTAGATTGGTGGACGCTAGGAATATTCATATTTGAATTATTGTATGGAGTGACACCATTTAGAGGTGTGGACAATGAGCTAACCCTAGCTAATATTGTGGCTCGAGCCCTTGAGTTCCCTAAAGAGCCATTGGTGCCTGCAACGACTAAGGACCTCATCTCTCAACTGTTGGTTAAGGACCCTGCAAGGCGAATGGGATCCACAATGGGTGCCTCAGCAATCAAACACCACCCGTTCTTCCAAGGGGTCAATTGGGCACTTTTAAGATGCACGCCCCCACCATTCATCCCCCCACCTTTCAATCGAGATGTTGTATCAGATGAAAGTTGCCCGGAAACACCAATGGACTATTATTAG 831 51.38 MLDHPFLPALYATIDSPKCSCLLTEFCPGGDLHVLRQRQPAKRFHESAVRFYASEVVVALEYVHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDHSTSVAQIISDQNPPLALPPSHHGGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELLYGVTPFRGVDNELTLANIVARALEFPKEPLVPATTKDLISQLLVKDPARRMGSTMGASAIKHHPFFQGVNWALLRCTPPPFIPPPFNRDVVSDESCPETPMDYY* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19464014 19467635 + Vvi6g1179 Vvi6g1179 788756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1179 276 PANTHER OS11G0150700 PROTEIN 1 117 - -
Vvi6g1179 276 PANTHER OS11G0150700 PROTEIN 120 276 - -
Vvi6g1179 276 Gene3D Transferase(Phosphotransferase) domain 1 31 256 - -
Vvi6g1179 276 PANTHER FLIPPASE KINASE 1-RELATED 120 276 - -
Vvi6g1179 276 PANTHER FLIPPASE KINASE 1-RELATED 1 117 - -
Vvi6g1179 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Vvi6g1179 276 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1179 276 Gene3D Phosphorylase Kinase; domain 1 2 30 - -
Vvi6g1179 276 SUPERFAMILY Protein kinase-like (PK-like) 2 269 IPR011009 -
Vvi6g1179 276 SMART serkin_6 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g1179 276 Pfam Protein kinase domain 2 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1179 Vvi13g657 ECH
Vvi6g1179 Vvi8g1012 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76689 PF00069 Pkinase 9.90E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1179 K08286 - vvi:100263703 545.043