Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g12 ATGGAGGACGCAATGGGAGGAAGATACTGGTGCCATAGTTGCTCACAAGTGGTGAATCCCATCGCTGAAGCAGAGCCCAAGTGCCCCTTGTGTCAAGATGGATTCATTGAGGACATCGATGGCACTGCTTCAAGGGATCATAATGACTCCGACTCTGATCTAGCTTCCGATCGAACCCTCTCTCTTTGGGCCCCAATCTTGTTGGGCATGATGGATGGTGAGGGTCGTAGAGGAGGAGAGACTGAACTTGATCGGGAACTTGATTCCATAATCAGGAGGAGAAGGAGAAGTTCTGCTACTATTCTCCAACTACTTCAAGGCATTAGAGCTGGAATGCGCCTGATTCTAATAAATCCTTTCAATCAAACTATAATTGTTCAGGGTTCTTTTGATTCAAACCAGGCCCAAAATCAGAATCAAAACACCATTGGCTCCCTGGGGGACTATTTCATTGGCCCCAGTTTAGATTTGTTGCTGCAACATTTAGCAGAAAATGATCCTAATAGATATGGGACACCACCGGCGCAAAAAGATGCAATTGAAGCAATGCCCACTGTGAAAATTAAGGAGAATTTGCAGTGTTCAGTGTGTTTGGATGACTTTGAGATTGGCGCTGAGGCAAGGGAGATGCCATGTAAGCATAAATTCCACAGTGGGTGTATTCTGCCATGGCTGGAGCTTCATAGCTCTTGTCCAGTCTGCAGGTTTCAGATAGCAGCTGATGAATCCAAGCTTGATTCAGATGCTTCTCCGAATGTTAGCAGTAACAGTAGCGAGAGGAGTAACAATGGCCATGGTAGCAGTGAAGAGGGAGATGGGGATGGGAGAAGTGGAAATGGCAGAAGGTCTACGTTCAGGTGGCCTTTTACCAGTTTATTTTCTTCCCAAGGATCACAAACTAGCAATGGGAATTCCTCATCATCAGGAGCAAATGCACCAGGGAAACAAATTGTGATTATCGGGTGTATCTATACATATTTTGCCCTTGGATTTCACCTCTTCTTTGCTTGTACTTACGGCTGCTTTGAAAGGTTCAACAAATATTGTTAA 1050 45.05 MEDAMGGRYWCHSCSQVVNPIAEAEPKCPLCQDGFIEDIDGTASRDHNDSDSDLASDRTLSLWAPILLGMMDGEGRRGGETELDRELDSIIRRRRRSSATILQLLQGIRAGMRLILINPFNQTIIVQGSFDSNQAQNQNQNTIGSLGDYFIGPSLDLLLQHLAENDPNRYGTPPAQKDAIEAMPTVKIKENLQCSVCLDDFEIGAEAREMPCKHKFHSGCILPWLELHSSCPVCRFQIAADESKLDSDASPNVSSNSSERSNNGHGSSEEGDGDGRSGNGRRSTFRWPFTSLFSSQGSQTSNGNSSSSGANAPGKQIVIIGCIYTYFALGFHLFFACTYGCFERFNKYC* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 257194 259488 + Vvi6g12 Vvi6g12 787589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g12 349 CDD RING-H2_RNF126_like 193 235 - -
Vvi6g12 349 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Vvi6g12 349 MobiDBLite consensus disorder prediction 246 280 - -
Vvi6g12 349 MobiDBLite consensus disorder prediction 247 264 - -
Vvi6g12 349 Pfam Ring finger domain 193 235 IPR001841 -
Vvi6g12 349 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 289 - -
Vvi6g12 349 SMART ring_2 194 234 IPR001841 -
Vvi6g12 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 241 IPR013083 -
Vvi6g12 349 MobiDBLite consensus disorder prediction 265 279 - -
Vvi6g12 349 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Vvi6g12 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 289 - -
Vvi6g12 349 SUPERFAMILY RING/U-box 183 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g12 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - vvi:100250148 494.582
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38