Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1220 ATGGCGACTCATAGGGTTGGAGAGACTAATTTATCAGGCTCAGCACCTTCAAACCACCATCTTCCATATGCAGTTCTTCATGGCATCAGCCCTCCTGCTGCAACTTTCATCAATCAAGAAGGATCTGCCTTTGATTTTGGGGAGCTGGAAGAAGCAATTGTGCTGCAAGGTGTTAAGATTAGAAATGATGAAGCTAAAACTTCTTTATTCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCAAAGAGGAAGTTCAAAGTCAGGAGGAGAGAGCACTGACTCAGGATCAGCAGTGAACACTCTTTCAAGTAGAGCTGAGGCCCAGTTGGAACCGGAATCTCCTATCAGTATAAAGCCAACGTCTGATCACCAGGCTTTTGATCAGAAGCATCTGCAGTTTCAACATCAACAGCAGTTAGAGATGGCAAGTGATACTTCTAGATTAGCAGGACCATCAGAATCTCAACCAGCTGCTTCTAAACCACCCCCGGAAAAGAGGAAAGGAGCTGGATCAACGTCAGAGAAAACGCTTGATGCCAAGACACTGAGACGTTTGGCACAAAACAGAGAAGCAGCAAGAAAGAGTAGGCTGAGAAAGAAGGCGTATGTGCAGCAGCTAGAATCCAGTAGGATTAAGCTCACTCAGCTTGAACAAGACCTTCAACGAGCCAGATCCCAGGGGTTGTTCTTGGGAGGAGGAGGAGGAGGTGGTGGTGGTGGGGGAGCTGGTGGAATTATAAGCCCTGGAGCTGCAATCTTTGATATGGAATATGCAAGATGGCTCGAGGATGATCACCGGCACATGTCGGAGCTTAGAACAGGCTTGCAGGCGCATTTGTTGGATGGCGATCTTAGGGTAATAGTTGATGGATATCTCTCTCACTATGATGAGATTTTTCGACTTAAGGGAGTGGCTGCTAAATCAGATGTTTTTCACCTCATTACTGGAATGTGGACAACTCCCGCTGAGCGTTGCTTCCTTTGGATGGGCGGTTTCCGGCCGTCTGATCTCATCAAGATGTTAATAGCACAATTAGACCCCCTAACAGAGCAGCAAGTTATGGGGATTTATGGTCTCCAACATTCCTCACAACAAGCAGAAGAGGCTCTCTCCCAGGGTCAGGAGCAGCTCCAACAATCTCTCATCGACACCATTGCCAGCGGCTCGGTTGCCGATGATATGGCTCATATGGTTATGGCTTTGGGCCAGCTTACCAACCTTGAAGGCTTTGTTCGCCAGGCTGATAATTTGAGACAGCAAACCATTCACCAATTGTGTCGGATACTGACAGTTCGACAAGCAGCACGTTGTTTTTTGGTGATTGGCGAGTACTATGGCCGATTACGAGCCCTCAGCTCCCTTTGGGCATCACGGCCCCGAGAGGCCATGATGGGCGACGAGCACTCATGCCAAACAACGACAGATTTGCATATGGTGCAGTCTTCACATAGTCATTTCACCAACTTTTGA 1503 48.1 MATHRVGETNLSGSAPSNHHLPYAVLHGISPPAATFINQEGSAFDFGELEEAIVLQGVKIRNDEAKTSLFTARPAATLEMFPSWPMRFQQTQRGSSKSGGESTDSGSAVNTLSSRAEAQLEPESPISIKPTSDHQAFDQKHLQFQHQQQLEMASDTSRLAGPSESQPAASKPPPEKRKGAGSTSEKTLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGGGGGGGGGGGAGGIISPGAAIFDMEYARWLEDDHRHMSELRTGLQAHLLDGDLRVIVDGYLSHYDEIFRLKGVAAKSDVFHLITGMWTTPAERCFLWMGGFRPSDLIKMLIAQLDPLTEQQVMGIYGLQHSSQQAEEALSQGQEQLQQSLIDTIASGSVADDMAHMVMALGQLTNLEGFVRQADNLRQQTIHQLCRILTVRQAARCFLVIGEYYGRLRALSSLWASRPREAMMGDEHSCQTTTDLHMVQSSHSHFTNF* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20304526 20311515 - Vvi6g1220 Vvi6g1220 788797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1220 500 SMART brlzneu 187 242 IPR004827 GO:0003700|GO:0006355
Vvi6g1220 500 MobiDBLite consensus disorder prediction 178 193 - -
Vvi6g1220 500 ProSiteProfiles DOG1 domain profile. 261 469 IPR025422 GO:0006351|GO:0043565
Vvi6g1220 500 CDD bZIP_HBP1b-like 191 241 - -
Vvi6g1220 500 PANTHER TRANSCRIPTION FACTOR TGA9 65 479 - -
Vvi6g1220 500 PANTHER TRANSCRIPTION FACTOR TGA9 65 479 - -
Vvi6g1220 500 Coils Coil 210 237 - -
Vvi6g1220 500 Pfam Seed dormancy control 278 353 IPR025422 GO:0006351|GO:0043565
Vvi6g1220 500 Gene3D - 190 239 - -
Vvi6g1220 500 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 233 IPR004827 GO:0003700|GO:0006355
Vvi6g1220 500 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
Vvi6g1220 500 MobiDBLite consensus disorder prediction 84 133 - -
Vvi6g1220 500 MobiDBLite consensus disorder prediction 141 164 - -
Vvi6g1220 500 SUPERFAMILY Leucine zipper domain 191 234 IPR046347 GO:0003700|GO:0006355
Vvi6g1220 500 MobiDBLite consensus disorder prediction 81 193 - -
Vvi6g1220 500 Pfam bZIP transcription factor 190 232 IPR004827 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14902 PF14144 DOG1 1.80E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1220 K14431 - vvi:100258619 928.702