Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1237 ATGATTGCTCTCACCGTTTGCCAGATGGTCGACACTTCCAACCGAGAGGTCCAAGCATTGATCCTATCGCCCACAAGGGAACTTGCATCTCAGACAGAGAAAGTGATTCTGGCCATTGGGGATTTCATAAATATACAAGCCCATGCATGTATTGGAGGCAAAAGTGTAGGTGAAGATATTAGAAAACTAGAATATGGCGTTCACATTGTGTCTGGAACTCCTGGAAGAGTGTGCGACATGATCAAGAGGAGAACATTGCGTACTAGAGCTATTAAACTATTAGTTCTTGATGAATCTGATGAGATGTTGAGCAGAGGTTTCAAGGACCAAATTTATGATGTTTACAGATATCTTCCACCAGAGCTTCAGGTTGTCTTGATTTCTGCTACCCTTCCAAATGAAATTTTGGAGATAACGAACAAATTTATGACAGATCCTGTAAGGATCCTTGTGAAACGTGATGAGTTGACTCTAGAGGGTATAAAGCAATTTTTTGTTGCCGTAGAAAGAGAAGAGTGGAAGTTTGACACTTTATGTGATCTTTATGATACTCTTACTATCACTCAAGCTGTTATTTTCTGCAACACGAAACGAAAGGTGGATTGGCTAACTGAGAAGATGCGCAGTAATAACTTTACCGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGATGCTATAATGGCAGAGTTCCGTTCTGGTACTACCCGTGTGCTGATCACAACAGACGTCTGGGCTCGTGGGCTTGATGTTCAACAGAAACTATATTTGGTTTCGTACTTAGTAATACTGAAACCAAGGAGCTGTAGTGTTTATTCTGGAGGGCACACTCCAGAAGACCTAACCATGTTAGGTTGCCAAACTGCCTCCTCTCTTTTGCTTTCCACAGAAGTTGCACCCTTGCTGGGCAGAATCACGATCACCAATTACATATTGACTTATAAAAAAAGGCATGAAAATATATATCATGTTTCCCTGGTGATTAATTATGACCTTCCAAATAATCGAGAGCTTTACATTCATCGTATTGGTCGTTCTGGTCGGTTTGGACGCAAGGGTGTTGCAATCAACTTTGTCAAAACCGATGATATCAAGATTCTAAGAGACATAGAGCAGTACTACAGTACCCAGATTGACGAAATGCCAATGAATGTGGCCGATCTGATTTAA 1176 41.33 MIALTVCQMVDTSNREVQALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHIVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQKLYLVSYLVILKPRSCSVYSGGHTPEDLTMLGCQTASSLLLSTEVAPLLGRITITNYILTYKKRHENIYHVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20551501 20558152 - Vvi6g1237 Vvi6g1237 788814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1237 391 Gene3D - 286 391 IPR027417 -
Vvi6g1237 391 Gene3D - 157 284 IPR027417 -
Vvi6g1237 391 CDD SF2_C_DEAD 161 361 - -
Vvi6g1237 391 SMART ultradead3 1 164 IPR014001 -
Vvi6g1237 391 SMART helicmild6 201 352 IPR001650 -
Vvi6g1237 391 Coils Coil 387 391 - -
Vvi6g1237 391 Pfam Helicase conserved C-terminal domain 174 256 IPR001650 -
Vvi6g1237 391 Pfam Helicase conserved C-terminal domain 322 352 IPR001650 -
Vvi6g1237 391 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 160 391 IPR001650 -
Vvi6g1237 391 Pfam DEAD/DEAH box helicase 4 135 IPR011545 GO:0003676|GO:0005524
Vvi6g1237 391 Gene3D - 3 156 IPR027417 -
Vvi6g1237 391 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 149 IPR014001 -
Vvi6g1237 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 255 IPR027417 -
Vvi6g1237 391 PANTHER BNAC03G41130D PROTEIN 319 384 - -
Vvi6g1237 391 PANTHER BNAC03G41130D PROTEIN 1 262 - -
Vvi6g1237 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 389 IPR027417 -
Vvi6g1237 391 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 319 384 - -
Vvi6g1237 391 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 262 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1237 K13025 - vvi:100255368 507.679