Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1247 ATGTTCATATTTCTCATGTATTCCCTGCATTTCACCCCTATAAATAGAGCCATTCTGTCTTCAATCTCCATCCAACCCTACAAGAAAATGAAGATGTCTGCAGCAGCAGTTGCTCTCGCTTTCGCCCTTGTTCTTGCAAACTTCGCCAACCAGTGCCATGGCGCACTGCAGGAGGGATTCTACAAGGGAAAATGTAACGTAGATGTTGAGAAGATAGTGTCCGGTATCATCACCCCACTAGTTGGTCAGAAACCGTGGATCACACCAGCTCTCTTGCGCATGCAGTTTCATGATTGCTTTGTCAAGGGATGTGATGCATCAATCCTACTAGATGGGAGCTCGAGCGAGAAAACTGCACCACCGAACCTAAGCGTGAGGGGATACGATGTTATCGATTTAGTCAAGGCTGCTATTGAGAAAATGTGCCCTGGAGTGGTATCTTGTGCTGATGTCATTGTCATGGCAACGAGAGATGCTGTTGCTGCGAGTAAAGGAGGGTGGTACAGTGTTCAAACAGGTAGAAGAGATGGCTTGGTATCTCTGGCTACAAATGTGAATCTCCCTGGTCCTTCAGTCTCAGTGGAGAATTCCACTGCAATATTCAACAGCAAAGGAATTAGCACTGAAGACATGGTTTACCTTCTTGGTGGTCACACTGTTGGAGTGACGCATTGTTCCCTCTTCAAAGATCGTTTGTACAATTTCAATAACACTGGGAGACCTGATCCAACCATGCAACCTTCGCTAGCTTTCTTCCTCAGATTAAGATGCCCTCAGAGTTCAACAGTTGACAACACAGTCAATCTTGACCAAGGTGGAAGCTCAGCAGATCTACTAGGCGAACCGACTTCAAACACCGTCGACAATTCCTTCTACAAGCAAATAGTGTTCCATAGAGGAGTTCTTCAAATTGATCAAGCACTGGCGTTGCATCAGCTGACCAAAGACACAGTGAACACAGTAGCCTTTGCACCAAATGACTACTTCCTTACCAAGTTTCAACAGGCCATGGTTAAGCTGGGTGCGGTTGAAGTCCTCACTGATGCTCAAGGAGAAATAAGGAAATCATGCCGAGCCACTAATTTTTAA 1089 45.73 MFIFLMYSLHFTPINRAILSSISIQPYKKMKMSAAAVALAFALVLANFANQCHGALQEGFYKGKCNVDVEKIVSGIITPLVGQKPWITPALLRMQFHDCFVKGCDASILLDGSSSEKTAPPNLSVRGYDVIDLVKAAIEKMCPGVVSCADVIVMATRDAVAASKGGWYSVQTGRRDGLVSLATNVNLPGPSVSVENSTAIFNSKGISTEDMVYLLGGHTVGVTHCSLFKDRLYNFNNTGRPDPTMQPSLAFFLRLRCPQSSTVDNTVNLDQGGSSADLLGEPTSNTVDNSFYKQIVFHRGVLQIDQALALHQLTKDTVNTVAFAPNDYFLTKFQQAMVKLGAVEVLTDAQGEIRKSCRATNF* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20716997 20718732 + Vvi6g1247 Vvi6g1247 788824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1247 362 Gene3D - 60 361 - -
Vvi6g1247 362 PANTHER PEROXIDASE 60 45 359 - -
Vvi6g1247 362 ProSitePatterns Peroxidases active site signature. 88 99 IPR019794 GO:0004601
Vvi6g1247 362 CDD secretory_peroxidase 56 360 IPR033905 GO:0004601|GO:0042744
Vvi6g1247 362 Pfam Peroxidase 79 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 ProSitePatterns Peroxidases proximal heme-ligand signature. 210 220 IPR019793 -
Vvi6g1247 362 PRINTS Plant peroxidase signature 90 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Plant peroxidase signature 126 139 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Plant peroxidase signature 145 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Plant peroxidase signature 164 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Plant peroxidase signature 209 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Plant peroxidase signature 278 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Plant peroxidase signature 294 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Plant peroxidase signature 335 348 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 Gene3D Peroxidase, domain 2 188 340 - -
Vvi6g1247 362 PRINTS Haem peroxidase superfamily signature 88 102 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Haem peroxidase superfamily signature 146 163 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Haem peroxidase superfamily signature 164 176 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PRINTS Haem peroxidase superfamily signature 280 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 SUPERFAMILY Heme-dependent peroxidases 56 361 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 PANTHER PEROXIDASE 25-RELATED 45 359 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi6g1247 362 ProSiteProfiles Plant heme peroxidase family profile. 55 361 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1247 K00430 - vvi:100262192 655.21