Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1278 ATGCACCCTCCCAAGCGCCACCTCCCCTTTCCGCCCGCCCGCCCGCCCTTCGTCCCCTCGCCCGGGGACTACCACCGCTTCTCCTCCTCCGGCCGCGTCCCCGATCACGAGGCCGACGAGGCCGTGGTGGTAAAATCTCCGCAATTAAAGCGGAAAAGTGAACCCGATTATGAAGCTGAGTCTAGCGAGTGGACTGCTGTTCCTGGTTTTACTGAAGTAGTCAACAGTCCTGTCCAGACACCTGTATCAGGAAAAGGAGGAAAGGCACAGAAAACATCAAGGATTACCAAGTGCAGCAGGTCTGGACCTCAAACTCCAGTATCTAATGCTGGTTCTCCTGGAAATAATCTTACTCCAGTAGGTCCCTGTCGTTATGATAGCTCACTAGGTCTCTTGACAAAGAAGTTCATTAATTTGATTAAACATGCAGAAGATGGTATTCTTGATCTAAATAAAGCTGCCGACACTTTAGAGGTACAGAAGAGGCGTATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATTGAGAAGAAGTTGAAGAATAGAATTCAGTGGAAGGGACTTGATGTCTCGAGGCCAGGAGAGGTTGATGAAAATGTTACTAGTTTACAGGAAGAAGTTGAAAACCTTTCTATTCAGGAGCGCAGATTAGATGCACAAATAAGAGATATGCAAGAAAGATTGAGGGACCTGAGTGAAGATGAAAACAATCAAAAGTGGCTTTTTGTCACTGAAGAAGACATCAAGGGGTTACCCTGCTTCCAGAAAGAAACCTTGATAGCAATTAAAGCCCCACATGGCACCACACTAGAAGTCCCAGATCCTGATGAGGCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTAACAGAAGAGAGCAGAGGGAAGGAGATTGAAATACAGGGACAAGATGCTCATAGAATGTCCTCTGATCTTAATGCGTCACAAGATTTTGTGAGTGGGATAATGAAGATCGTTCCATCAGATGTTGATAGTGATGCAGATTACTGGCTTTTGTCAGATGCCGATGTGAGCATCACAGACATGTGGAGGACAGAGCCTGGAGTTGAATGGAATGAGTTAGATGCTCTTAATGATGACTATGCAATGGCTAATGTCAGCACACCACAGCCTCAAACTCCACCATCTAGTGCTGCGGAAGTGCCTCCTGCTGCCAATACTCCAGGGAGGTGA 1341 45.86 MHPPKRHLPFPPARPPFVPSPGDYHRFSSSGRVPDHEADEAVVVKSPQLKRKSEPDYEAESSEWTAVPGFTEVVNSPVQTPVSGKGGKAQKTSRITKCSRSGPQTPVSNAGSPGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVDENVTSLQEEVENLSIQERRLDAQIRDMQERLRDLSEDENNQKWLFVTEEDIKGLPCFQKETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSSMGPIDVYLVSQFEEKFEEINGLEAPPSFPSSSGYNEDPTAAMVTEESRGKEIEIQGQDAHRMSSDLNASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTEPGVEWNELDALNDDYAMANVSTPQPQTPPSSAAEVPPAANTPGR* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21269899 21279608 - Vvi6g1278 Vvi6g1278 788855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1278 446 Pfam E2F transcription factor CC-MB domain 205 305 IPR032198 GO:0046983
Vvi6g1278 446 CDD E2F_DD 200 306 IPR032198 GO:0046983
Vvi6g1278 446 MobiDBLite consensus disorder prediction 418 446 - -
Vvi6g1278 446 Pfam E2F/DP family winged-helix DNA-binding domain 126 189 IPR003316 GO:0005667|GO:0006355
Vvi6g1278 446 SUPERFAMILY Winged helix DNA-binding domain 124 187 IPR036390 -
Vvi6g1278 446 Gene3D - 119 191 IPR036388 -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 75 118 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 1 19 - -
Vvi6g1278 446 SMART E2F_TDP_2 124 189 IPR003316 GO:0005667|GO:0006355
Vvi6g1278 446 Coils Coil 202 236 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 29 59 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 1 63 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 75 116 - -
Vvi6g1278 446 PANTHER TRANSCRIPTION FACTOR E2F 4 442 IPR015633 GO:0000978|GO:0006357
Vvi6g1278 446 Gene3D - 196 306 - -
Vvi6g1278 446 PANTHER TRANSCRIPTION FACTOR E2FB 4 442 - -
Vvi6g1278 446 SUPERFAMILY E2F-DP heterodimerization region 201 306 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1278 K06620 E2F3; transcription factor E2F3 - vvi:100245057 859.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g1278 Vvi8g917 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14908 PF16421 E2F_CC-MB 9.40E-35 No_clan Vvi TF