Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g1278 ATGCACCCTCCCAAGCGCCACCTCCCCTTTCCGCCCGCCCGCCCGCCCTTCGTCCCCTCGCCCGGGGACTACCACCGCTTCTCCTCCTCCGGCCGCGTCCCCGATCACGAGGCCGACGAGGCCGTGGTGGTAAAATCTCCGCAATTAAAGCGGAAAAGTGAACCCGATTATGAAGCTGAGTCTAGCGAGTGGACTGCTGTTCCTGGTTTTACTGAAGTAGTCAACAGTCCTGTCCAGACACCTGTATCAGGAAAAGGAGGAAAGGCACAGAAAACATCAAGGATTACCAAGTGCAGCAGGTCTGGACCTCAAACTCCAGTATCTAATGCTGGTTCTCCTGGAAATAATCTTACTCCAGTAGGTCCCTGTCGTTATGATAGCTCACTAGGTCTCTTGACAAAGAAGTTCATTAATTTGATTAAACATGCAGAAGATGGTATTCTTGATCTAAATAAAGCTGCCGACACTTTAGAGGTACAGAAGAGGCGTATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATTGAGAAGAAGTTGAAGAATAGAATTCAGTGGAAGGGACTTGATGTCTCGAGGCCAGGAGAGGTTGATGAAAATGTTACTAGTTTACAGGAAGAAGTTGAAAACCTTTCTATTCAGGAGCGCAGATTAGATGCACAAATAAGAGATATGCAAGAAAGATTGAGGGACCTGAGTGAAGATGAAAACAATCAAAAGTGGCTTTTTGTCACTGAAGAAGACATCAAGGGGTTACCCTGCTTCCAGAAAGAAACCTTGATAGCAATTAAAGCCCCACATGGCACCACACTAGAAGTCCCAGATCCTGATGAGGCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTAACAGAAGAGAGCAGAGGGAAGGAGATTGAAATACAGGGACAAGATGCTCATAGAATGTCCTCTGATCTTAATGCGTCACAAGATTTTGTGAGTGGGATAATGAAGATCGTTCCATCAGATGTTGATAGTGATGCAGATTACTGGCTTTTGTCAGATGCCGATGTGAGCATCACAGACATGTGGAGGACAGAGCCTGGAGTTGAATGGAATGAGTTAGATGCTCTTAATGATGACTATGCAATGGCTAATGTCAGCACACCACAGCCTCAAACTCCACCATCTAGTGCTGCGGAAGTGCCTCCTGCTGCCAATACTCCAGGGAGGTGA 1341 45.86 MHPPKRHLPFPPARPPFVPSPGDYHRFSSSGRVPDHEADEAVVVKSPQLKRKSEPDYEAESSEWTAVPGFTEVVNSPVQTPVSGKGGKAQKTSRITKCSRSGPQTPVSNAGSPGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVDENVTSLQEEVENLSIQERRLDAQIRDMQERLRDLSEDENNQKWLFVTEEDIKGLPCFQKETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSSMGPIDVYLVSQFEEKFEEINGLEAPPSFPSSSGYNEDPTAAMVTEESRGKEIEIQGQDAHRMSSDLNASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTEPGVEWNELDALNDDYAMANVSTPQPQTPPSSAAEVPPAANTPGR* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21269899 21279608 - Vvi6g1278 Vvi6g1278 788855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g1278 446 Pfam E2F transcription factor CC-MB domain 205 305 IPR032198 GO:0046983
Vvi6g1278 446 CDD E2F_DD 200 306 IPR032198 GO:0046983
Vvi6g1278 446 MobiDBLite consensus disorder prediction 418 446 - -
Vvi6g1278 446 Pfam E2F/DP family winged-helix DNA-binding domain 126 189 IPR003316 GO:0005667|GO:0006355
Vvi6g1278 446 SUPERFAMILY Winged helix DNA-binding domain 124 187 IPR036390 -
Vvi6g1278 446 Gene3D - 119 191 IPR036388 -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 75 118 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 1 19 - -
Vvi6g1278 446 SMART E2F_TDP_2 124 189 IPR003316 GO:0005667|GO:0006355
Vvi6g1278 446 Coils Coil 202 236 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 29 59 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 1 63 - -
Vvi6g1278 446 MobiDBLite consensus disorder prediction 75 116 - -
Vvi6g1278 446 PANTHER TRANSCRIPTION FACTOR E2F 4 442 IPR015633 GO:0000978|GO:0006357
Vvi6g1278 446 Gene3D - 196 306 - -
Vvi6g1278 446 PANTHER TRANSCRIPTION FACTOR E2FB 4 442 - -
Vvi6g1278 446 SUPERFAMILY E2F-DP heterodimerization region 201 306 IPR037241 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1278 Vvi8g917 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14908 PF16421 E2F_CC-MB 9.40E-35 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g1278 K06620 - vvi:100245057 859.366