Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g1278 | ATGCACCCTCCCAAGCGCCACCTCCCCTTTCCGCCCGCCCGCCCGCCCTTCGTCCCCTCGCCCGGGGACTACCACCGCTTCTCCTCCTCCGGCCGCGTCCCCGATCACGAGGCCGACGAGGCCGTGGTGGTAAAATCTCCGCAATTAAAGCGGAAAAGTGAACCCGATTATGAAGCTGAGTCTAGCGAGTGGACTGCTGTTCCTGGTTTTACTGAAGTAGTCAACAGTCCTGTCCAGACACCTGTATCAGGAAAAGGAGGAAAGGCACAGAAAACATCAAGGATTACCAAGTGCAGCAGGTCTGGACCTCAAACTCCAGTATCTAATGCTGGTTCTCCTGGAAATAATCTTACTCCAGTAGGTCCCTGTCGTTATGATAGCTCACTAGGTCTCTTGACAAAGAAGTTCATTAATTTGATTAAACATGCAGAAGATGGTATTCTTGATCTAAATAAAGCTGCCGACACTTTAGAGGTACAGAAGAGGCGTATATATGACATAACAAATGTCCTTGAAGGAATTGGTCTCATTGAGAAGAAGTTGAAGAATAGAATTCAGTGGAAGGGACTTGATGTCTCGAGGCCAGGAGAGGTTGATGAAAATGTTACTAGTTTACAGGAAGAAGTTGAAAACCTTTCTATTCAGGAGCGCAGATTAGATGCACAAATAAGAGATATGCAAGAAAGATTGAGGGACCTGAGTGAAGATGAAAACAATCAAAAGTGGCTTTTTGTCACTGAAGAAGACATCAAGGGGTTACCCTGCTTCCAGAAAGAAACCTTGATAGCAATTAAAGCCCCACATGGCACCACACTAGAAGTCCCAGATCCTGATGAGGCTGTTGATTATCCTCAGAGGAGATACAGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTAACAGAAGAGAGCAGAGGGAAGGAGATTGAAATACAGGGACAAGATGCTCATAGAATGTCCTCTGATCTTAATGCGTCACAAGATTTTGTGAGTGGGATAATGAAGATCGTTCCATCAGATGTTGATAGTGATGCAGATTACTGGCTTTTGTCAGATGCCGATGTGAGCATCACAGACATGTGGAGGACAGAGCCTGGAGTTGAATGGAATGAGTTAGATGCTCTTAATGATGACTATGCAATGGCTAATGTCAGCACACCACAGCCTCAAACTCCACCATCTAGTGCTGCGGAAGTGCCTCCTGCTGCCAATACTCCAGGGAGGTGA | 1341 | 45.86 | MHPPKRHLPFPPARPPFVPSPGDYHRFSSSGRVPDHEADEAVVVKSPQLKRKSEPDYEAESSEWTAVPGFTEVVNSPVQTPVSGKGGKAQKTSRITKCSRSGPQTPVSNAGSPGNNLTPVGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEVDENVTSLQEEVENLSIQERRLDAQIRDMQERLRDLSEDENNQKWLFVTEEDIKGLPCFQKETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSSMGPIDVYLVSQFEEKFEEINGLEAPPSFPSSSGYNEDPTAAMVTEESRGKEIEIQGQDAHRMSSDLNASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTEPGVEWNELDALNDDYAMANVSTPQPQTPPSSAAEVPPAANTPGR* | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 21269899 | 21279608 | - | Vvi6g1278 | Vvi6g1278 | 788855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g1278 | 446 | Pfam | E2F transcription factor CC-MB domain | 205 | 305 | IPR032198 | GO:0046983 | |
Vvi6g1278 | 446 | CDD | E2F_DD | 200 | 306 | IPR032198 | GO:0046983 | |
Vvi6g1278 | 446 | MobiDBLite | consensus disorder prediction | 418 | 446 | - | - | |
Vvi6g1278 | 446 | Pfam | E2F/DP family winged-helix DNA-binding domain | 126 | 189 | IPR003316 | GO:0005667|GO:0006355 | |
Vvi6g1278 | 446 | SUPERFAMILY | Winged helix DNA-binding domain | 124 | 187 | IPR036390 | - | |
Vvi6g1278 | 446 | Gene3D | - | 119 | 191 | IPR036388 | - | |
Vvi6g1278 | 446 | MobiDBLite | consensus disorder prediction | 75 | 118 | - | - | |
Vvi6g1278 | 446 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Vvi6g1278 | 446 | SMART | E2F_TDP_2 | 124 | 189 | IPR003316 | GO:0005667|GO:0006355 | |
Vvi6g1278 | 446 | Coils | Coil | 202 | 236 | - | - | |
Vvi6g1278 | 446 | MobiDBLite | consensus disorder prediction | 29 | 59 | - | - | |
Vvi6g1278 | 446 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Vvi6g1278 | 446 | MobiDBLite | consensus disorder prediction | 75 | 116 | - | - | |
Vvi6g1278 | 446 | PANTHER | TRANSCRIPTION FACTOR E2F | 4 | 442 | IPR015633 | GO:0000978|GO:0006357 | |
Vvi6g1278 | 446 | Gene3D | - | 196 | 306 | - | - | |
Vvi6g1278 | 446 | PANTHER | TRANSCRIPTION FACTOR E2FB | 4 | 442 | - | - | |
Vvi6g1278 | 446 | SUPERFAMILY | E2F-DP heterodimerization region | 201 | 306 | IPR037241 | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14908 | PF16421 | E2F_CC-MB | 9.40E-35 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g1278 | K06620 | - | vvi:100245057 | 859.366 |