Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g13 ATGAACGTTGCCAGATTCAACTTCTCCCATGGCTCCCATGAATATCACCTGGAAACCCTTAGTAACCTCCGCGCCGCCATGGACTCCACCGGTATTCTATGTGCTGTTATGCTCGATACCAAGGGTCCAGAAATTCGAACCGGGTTTTTGAAGGATGAAAAGCCCATCCATCTGAAGCAAGGCCAAGAGATCACCATATCCACTGACTATAACATAAAGGGTGATGAGAAAATGATTTGCATGAGCTACAAAAAGTTGGCTGAAGATGTAAAACCTGATAGTGTCATACTCTGTGCTGATGGCACCATCACATTCACAGTCCTATCTTGTGATAAACAAAAGGGTTTGGTTTGCTGCCGCTGCGAGAATTCTGCTGTTCTTGGCGAGAGGAAGAATGTTAATCTTCCAGGGGTCATCGTTGATCTTCCAACTTTGACAGAGAAAGACAAGGAAGATATCCTAAACTGGGGAGTTCCCAATAAAATTGACATGATTGCTCTGTCTTTTGTGCGCAAAGGTTCAGATCTTGTTGAGGTTCGGAAGCTGCTGGGGAAGCATGCCAAGAATATCCTCCTCATGTCGAAGGTTGAAAATCAAGAAGGGGTGGCAAATTTTGATGAAATCCTTGCAAATTCAGATGCATTTATGGTGGCACGAGGTGATCTGGGAATGGAAATCCCAATAGAAAAGATATTTTTAGCCCAGAAAGTGATGGTCTACAAGTGCAACATTCAAGGAAAGCCTGTTGTGACTGCAACCCAGATGCTGGAGTCCATGATCAAATCTCCCCGGCCAACTCGAGCTGAAGCCACTGATGTTGCCAATGCAGTTCTTGATGGTACAGACTGTGTGATGCTGAGTGGTGAAACAGCTGCTGGAGCTTACCCAGAACTTGCAGTTCGGACCATGGCAAAAATATGCATCGAAGCAGAGAGCACACTCGACTATGGAGATGTCTTCAAAAGGATCATGAAAAATGCCCCCGTACCCATGAGCCCATTGGAGAGCCTGGCTGCTTCGGCAGTTAGAACAGCCAACTCGGCAAGAGCAGCTCTCATATTGGTCTTAACCAGAGGAGGAAGTACTGCAAAACTGGTGGCTAAGTACAGGCCGGGCATGCCCATTTTGTCTGTGGTTGTCCCTGAGATAAAGACCGATTCCTTTGATTGTGCTGCATCTGCTAGGGCTTCTCATGCAGAGACAACAGAGGAAGCACTGGAGTTTGCCATTCAACATGCCAAGGCAAAGGGATTCTGCAAGAAAGGAGATTCCCTCGTGGCTCTGCACCGCGTTGGTTCTGCATCTGTGATCAAGATCTTGACCGTGAAGTGA 1332 46.85 MNVARFNFSHGSHEYHLETLSNLRAAMDSTGILCAVMLDTKGPEIRTGFLKDEKPIHLKQGQEITISTDYNIKGDEKMICMSYKKLAEDVKPDSVILCADGTITFTVLSCDKQKGLVCCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRKLLGKHAKNILLMSKVENQEGVANFDEILANSDAFMVARGDLGMEIPIEKIFLAQKVMVYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICIEAESTLDYGDVFKRIMKNAPVPMSPLESLAASAVRTANSARAALILVLTRGGSTAKLVAKYRPGMPILSVVVPEIKTDSFDCAASARASHAETTEEALEFAIQHAKAKGFCKKGDSLVALHRVGSASVIKILTVK* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 260300 263555 - Vvi6g13 Vvi6g13 787590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g13 443 TIGRFAM pyruv_kin: pyruvate kinase 1 431 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 1 316 IPR015813 GO:0003824
Vvi6g13 443 Pfam Pyruvate kinase, barrel domain 1 318 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 ProSitePatterns Pyruvate kinase active site signature. 190 202 IPR018209 GO:0004743|GO:0006096
Vvi6g13 443 PRINTS Pyruvate kinase family signature 32 48 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PRINTS Pyruvate kinase family signature 162 176 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PRINTS Pyruvate kinase family signature 192 218 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PRINTS Pyruvate kinase family signature 219 243 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PRINTS Pyruvate kinase family signature 244 268 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PRINTS Pyruvate kinase family signature 269 287 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PRINTS Pyruvate kinase family signature 288 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PANTHER PYRUVATE KINASE 391 443 - -
Vvi6g13 443 PANTHER PYRUVATE KINASE 1 390 - -
Vvi6g13 443 SUPERFAMILY PK beta-barrel domain-like 43 142 IPR011037 -
Vvi6g13 443 Gene3D - 311 430 IPR036918 -
Vvi6g13 443 Pfam Pyruvate kinase, alpha/beta domain 335 439 IPR015795 -
Vvi6g13 443 PANTHER PYRUVATE KINASE 1 390 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 PANTHER PYRUVATE KINASE 391 443 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi6g13 443 Gene3D - 1 310 IPR040442 -
Vvi6g13 443 Gene3D - 43 143 IPR015806 GO:0004743|GO:0006096
Vvi6g13 443 SUPERFAMILY PK C-terminal domain-like 299 442 IPR036918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g13 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - vvi:100255318 850.892
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g13 Vvi8g1364 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g13 . . . . . . Bma14g00739 Bma07g01367 . . . . . . . Cpe05g00567 . . . . . . . . Cla02g02367 Cam02g2518 Cec02g2565 Cco02g2594 Clacu02g2492 Cmu02g2423 Cre02g2741 . Cone5ag1304 Cone18ag0007 Cone11ag1586 . . Chy05g00007 Cme05g00009 . . Bda07g00775 Bda09g00342 . Bpe11g00949 . . Sed01g3428 Cmo02g01195 Cmo20g00006 Cma02g01161 Cma20g00006 Car02g00961 Car20g00004 Cpe16g00942 . Bhi10g00488 Tan07g0564 Cmetu05g1641 . Hepe08g0007 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001167 5 3 3 5 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 1 2 2 2 3 2 4 78