Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g15 ATGAACCAGAATAGGAGGCATAACCAAGGAAATACAGGACCGGTTCTCTTAGCTGACAGTAAGCCTAGGCTCAAATGGACACCAGAGCTTCATGAGCGCTTTATGGAAGCAGTCAATCAACTTGGAGGAGCATATAAAGCTACTCCAAAAACAATCATGAAGCAAATGGGGATTCAGGGAATTACTCTAAACCACATAAAAAGCCATCTTCAGAAGTACAGAATGAGTGAGCATTTCCTTGGACAAGCTAGTACTGAGAACACAAGGAATGATGGTATTGCTGCAGTGACTGGAGACAGGAGGTTTGAAGCCAATGGAGAGAGTATCTACAAAATACCCCTAGGTTCCCACACAAATAAAAGCTTACAGAAGAGTACAGCACTACAGATGCTAATTGAAGTGCCGAGAAGACCCCATGAACAGCTTGAGGTACTCCACAATTTTAATTCTAGATTTCTAACATCTTTGATATTTACCATATCCCATATTTGA 492 41.26 MNQNRRHNQGNTGPVLLADSKPRLKWTPELHERFMEAVNQLGGAYKATPKTIMKQMGIQGITLNHIKSHLQKYRMSEHFLGQASTENTRNDGIAAVTGDRRFEANGESIYKIPLGSHTNKSLQKSTALQMLIEVPRRPHEQLEVLHNFNSRFLTSLIFTISHI* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 290038 291140 + Vvi6g15 Vvi6g15 787592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g15 163 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 75 IPR006447 GO:0003677
Vvi6g15 163 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Vvi6g15 163 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 145 IPR044848 GO:0003700
Vvi6g15 163 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Vvi6g15 163 PANTHER MYB-RELATED PROTEIN 2 7 145 - -
Vvi6g15 163 Pfam Myb-like DNA-binding domain 23 74 IPR001005 -
Vvi6g15 163 Gene3D - 20 78 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g15 Vvi8g1362 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14909 PF00249 Myb_DNA-binding 3.80E-10 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g15 - - vvi:100260393 276.944