Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g153 ATGGGAGAATTTGAAGAGATTGGAGTTGATATGTGCTCTGATATAGAAGTTGATGAGGTAAGGTGTGAAAATATCGCGGAGAAAGATGTCAGTGATGAAGAGATTGAAGCAGAGGAATTGGAGAGACGAATGTGGAAGGACCGTATTAAACTCAAGAGGATCAAGGAAAGACAAAAGATCACAGCCCAACAGGCTGCCGAGAAGCAGAAGCCCAAACCGAATGCTGATCATGCTCGGAGGAAGAAAATGTCTAGAGCGCAAGATGGGATTCTTAAATACATGCTGAAGCTGATGGAGGTGTGCAAAGCTCGTGGGTTCGTGTATGGGATCATTCCTGAGAAGGGTAAACCAGTAAGTGGTGCATCTGACAATATAAGAGCTTGGTGGAAAGAAAAGGTGAAGTTTGATAAGAATGGGCCAGCAGCCATAGCCAAATATGAGGCAGAATGCCTTGCCATGGTCGAAAATGAGAATAATCGAAATGGAAATTCTCAAAGCACCCTTCAAGACCTGCAGGATGCAACGTTGGGGTCACTTTTGTCTTCCTTGATGCAACACTGTGATCCGCCTCAGAGGAAGTATCCACTAGAGAAGGGTGTTCCGCCACCTTGGTGGCCTTCAGGGAATGAGGATTGGTGGGTTAAATTAGGTTTAGCGAGAAGCCAAAGTCCTCCTTATAAGAAACCACATGATCTGAAAAAGATGTGGAAAGTTGGAGTGTTAACAGCTGTGATCAAGCATATGTCACCTGATATTTCTAAGATCAGGAGGCTTGTTCGGCAGTCGAAATGCTTACAGGATAAGATGACTGCAAAGGAGAGCTCGATTTGGTTGGGGGTTTTGAACCGAGAGGAATCCCTCATCCGGCAGCCTAGCAGTGATAATGGGACATCTGGCATCACTGGAACACCTCCAAATGGTCATGATGGAAAGAACAAAGTCGCTATGGATATAGCGTCATTTGAAGATGATCGCGATAATAGTGGTGCCCAGCCTGTCCAAGATAAAAAAAAGGGGCGAAAACAACTTAAGAGAAAGAGACCCCATGTGAAATCCAGGCCTGTCAATCAAGAGTCTGCACCATCTCTAGAAGAGAATCTACATGAGGAGTCAAGAAACTCTCTGCAACATCTACATAATGAGCCAAGAAATTCTTTGCCTGATATAAACCACAATGATGCTCAGTTGGCTCCATACGAGATGCTTGGCACCCAACAGGAAAATGATAGAGTCACATCTTTGAGGCCTCTGGAGAAAGATCTTGAGAATCAATCCCAGTTACCAGAACCTGAATTTAACCATTTCTCTGCTTTTCCTTCTGCCAATGCAATCTCCACGCAGAGCATGTATGTGGGTGGCAGGCCTTTGCTTTACCCTGCAGTGCAAAATGCTGAGTTGCATCATGGAACTCCTTATGAATTCTATAATCCACCATCTGATTATGGGCACAATCCTGATGGACAACAATCCCATATGGCAATGAATGAAACCCAGATGAGGCTGGAGGATGGCAGAATTCACGAACCTGAACTAAATAGAAATGGAAATGATATTTCTGGTGGTAACTTGCGTCATTATGTAAAAGACACATTTCATAGTGGGCAAGATAGACCTGTGGAAAGTCATTATGGGTCTCCAATCGAGAGCCTGTCACTAGATTTTGGAGGATTCAATAGTCCGTTTGATCTTGGAATTGATGGGACTTCATTAGGTACCCCTGATATAGACTATTTGCTTGACGATGACTTGATCCAATACTTCGGAGCATAG 1770 44.07 MGEFEEIGVDMCSDIEVDEVRCENIAEKDVSDEEIEAEELERRMWKDRIKLKRIKERQKITAQQAAEKQKPKPNADHARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMVENENNRNGNSQSTLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLARSQSPPYKKPHDLKKMWKVGVLTAVIKHMSPDISKIRRLVRQSKCLQDKMTAKESSIWLGVLNREESLIRQPSSDNGTSGITGTPPNGHDGKNKVAMDIASFEDDRDNSGAQPVQDKKKGRKQLKRKRPHVKSRPVNQESAPSLEENLHEESRNSLQHLHNEPRNSLPDINHNDAQLAPYEMLGTQQENDRVTSLRPLEKDLENQSQLPEPEFNHFSAFPSANAISTQSMYVGGRPLLYPAVQNAELHHGTPYEFYNPPSDYGHNPDGQQSHMAMNETQMRLEDGRIHEPELNRNGNDISGGNLRHYVKDTFHSGQDRPVESHYGSPIESLSLDFGGFNSPFDLGIDGTSLGTPDIDYLLDDDLIQYFGA* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2026161 2029978 + Vvi6g153 Vvi6g153 787730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g153 589 MobiDBLite consensus disorder prediction 315 337 - -
Vvi6g153 589 MobiDBLite consensus disorder prediction 288 387 - -
Vvi6g153 589 Coils Coil 154 174 - -
Vvi6g153 589 Coils Coil 23 57 - -
Vvi6g153 589 SUPERFAMILY DNA-binding domain of EIN3-like 166 289 IPR023278 GO:0003700|GO:0005634
Vvi6g153 589 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 326 588 IPR006957 GO:0005634
Vvi6g153 589 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 10 326 IPR006957 GO:0005634
Vvi6g153 589 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 10 326 - -
Vvi6g153 589 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 326 588 - -
Vvi6g153 589 MobiDBLite consensus disorder prediction 60 83 - -
Vvi6g153 589 MobiDBLite consensus disorder prediction 288 305 - -
Vvi6g153 589 MobiDBLite consensus disorder prediction 363 377 - -
Vvi6g153 589 Pfam Ethylene insensitive 3 38 285 IPR006957 GO:0005634
Vvi6g153 589 Gene3D - 73 148 IPR023278 GO:0003700|GO:0005634
Vvi6g153 589 Gene3D - 158 296 IPR023278 GO:0003700|GO:0005634
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14910 PF04873 EIN3 4.00E-127 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g153 K14514 - vvi:100248434 1164.06