Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g164 ATGCCACATCATAATTCAGCAGCTCCTGGTACAGTGGAGAATTCTTACAGTGCGGTTTCTTCAATGGGGATGGATCAGTCGCAGCAGATAAAGATTGGTGGAGGCAACAATTCGAATCTTATTCGACATAGTAGCTCACCTGCAGGACTGTTCTCCCACCTAAATGTTGAAAATGGCTATGCTATAATGAGAGGCATGGGAAATTTCGGGTCTGGAAGTGGGACTAATGGAGAACCATCTTTTTCTTCTGCAAGCAGATTGAAGGGTCAAATAAACTTCTCGTCAGGGCCACCTTCTTCCTCAGGCCTAGTGACTCCCATCTCTGAAATGGGGAACAAAAGCATGGGAACAGGTAGTCCAGACAATGGAAGTTTTGGTGAAGGTCATAGTAACAGTGGAGGTTTCATCACAGGCTTCCCAATAGGCTCTTGGGATGATTCTGCAATCATGTCTGAAAGTTTTAGTAGCTTGAAAAGTGTTAGAGATGATGAGGCAAAGACTTTTTCTGGTTTGAATGCATCTGAAGCTCAGAAGGGCGAGCCTGCAAACCGCCCTCCTGTTTTGGCTCATCACTTGAGTTTGCCAACAAAGACTTCTGCAGATTTGACGACCATTGAAAAGTATTTGCAGTTCCAAGATTCTGTACCTTGTAAGATTCGAGCCAAACGGGGATGTGCCACTCATCCACGAAGCATCGCTGAGAGGGTGAGAAGAACCCGAATCAGCGAAAGGATGAGGAAACTACAAGAGCTTGTCCCTAACATGGACAAGCAAACAAACACATCAGACATGTTAGATTTGGCTGTTGACTATATTAAAGACCTTCAGAAACAGGTCAAGACCCTCTCAGATAATCGGGCAAAGTGTACGTGTTCAAACAAGCAGAAGCCATAG 894 44.85 MPHHNSAAPGTVENSYSAVSSMGMDQSQQIKIGGGNNSNLIRHSSSPAGLFSHLNVENGYAIMRGMGNFGSGSGTNGEPSFSSASRLKGQINFSSGPPSSSGLVTPISEMGNKSMGTGSPDNGSFGEGHSNSGGFITGFPIGSWDDSAIMSESFSSLKSVRDDEAKTFSGLNASEAQKGEPANRPPVLAHHLSLPTKTSADLTTIEKYLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQVKTLSDNRAKCTCSNKQKP* 298
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2129442 2132947 - Vvi6g164 Vvi6g164 787741
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g164 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 295 - -
Vvi6g164 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 287 IPR036638 GO:0046983
Vvi6g164 297 CDD bHLH_AtbHLH_like 230 283 IPR045239 -
Vvi6g164 297 PANTHER TRANSCRIPTION FACTOR BHLH130 11 295 - -
Vvi6g164 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 275 IPR011598 GO:0046983
Vvi6g164 297 Gene3D - 226 296 IPR036638 GO:0046983
Vvi6g164 297 MobiDBLite consensus disorder prediction 112 131 - -
Vvi6g164 297 SMART finulus 231 281 IPR011598 GO:0046983
Vvi6g164 297 Pfam Helix-loop-helix DNA-binding domain 230 276 IPR011598 GO:0046983
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi6g164 Vvi8g1384 ECH
Vvi6g164 Vvi8g1193 ECH
Vvi6g164 Vvi13g1179 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14912 PF00010 HLH 5.20E-10 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g164 - - vvi:100253656 597.43