Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g164 | ATGCCACATCATAATTCAGCAGCTCCTGGTACAGTGGAGAATTCTTACAGTGCGGTTTCTTCAATGGGGATGGATCAGTCGCAGCAGATAAAGATTGGTGGAGGCAACAATTCGAATCTTATTCGACATAGTAGCTCACCTGCAGGACTGTTCTCCCACCTAAATGTTGAAAATGGCTATGCTATAATGAGAGGCATGGGAAATTTCGGGTCTGGAAGTGGGACTAATGGAGAACCATCTTTTTCTTCTGCAAGCAGATTGAAGGGTCAAATAAACTTCTCGTCAGGGCCACCTTCTTCCTCAGGCCTAGTGACTCCCATCTCTGAAATGGGGAACAAAAGCATGGGAACAGGTAGTCCAGACAATGGAAGTTTTGGTGAAGGTCATAGTAACAGTGGAGGTTTCATCACAGGCTTCCCAATAGGCTCTTGGGATGATTCTGCAATCATGTCTGAAAGTTTTAGTAGCTTGAAAAGTGTTAGAGATGATGAGGCAAAGACTTTTTCTGGTTTGAATGCATCTGAAGCTCAGAAGGGCGAGCCTGCAAACCGCCCTCCTGTTTTGGCTCATCACTTGAGTTTGCCAACAAAGACTTCTGCAGATTTGACGACCATTGAAAAGTATTTGCAGTTCCAAGATTCTGTACCTTGTAAGATTCGAGCCAAACGGGGATGTGCCACTCATCCACGAAGCATCGCTGAGAGGGTGAGAAGAACCCGAATCAGCGAAAGGATGAGGAAACTACAAGAGCTTGTCCCTAACATGGACAAGCAAACAAACACATCAGACATGTTAGATTTGGCTGTTGACTATATTAAAGACCTTCAGAAACAGGTCAAGACCCTCTCAGATAATCGGGCAAAGTGTACGTGTTCAAACAAGCAGAAGCCATAG | 894 | 44.85 | MPHHNSAAPGTVENSYSAVSSMGMDQSQQIKIGGGNNSNLIRHSSSPAGLFSHLNVENGYAIMRGMGNFGSGSGTNGEPSFSSASRLKGQINFSSGPPSSSGLVTPISEMGNKSMGTGSPDNGSFGEGHSNSGGFITGFPIGSWDDSAIMSESFSSLKSVRDDEAKTFSGLNASEAQKGEPANRPPVLAHHLSLPTKTSADLTTIEKYLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQVKTLSDNRAKCTCSNKQKP* | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2129442 | 2132947 | - | Vvi6g164 | Vvi6g164 | 787741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g164 | 297 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 11 | 295 | - | - | |
Vvi6g164 | 297 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 228 | 287 | IPR036638 | GO:0046983 | |
Vvi6g164 | 297 | CDD | bHLH_AtbHLH_like | 230 | 283 | IPR045239 | - | |
Vvi6g164 | 297 | PANTHER | TRANSCRIPTION FACTOR BHLH130 | 11 | 295 | - | - | |
Vvi6g164 | 297 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 225 | 275 | IPR011598 | GO:0046983 | |
Vvi6g164 | 297 | Gene3D | - | 226 | 296 | IPR036638 | GO:0046983 | |
Vvi6g164 | 297 | MobiDBLite | consensus disorder prediction | 112 | 131 | - | - | |
Vvi6g164 | 297 | SMART | finulus | 231 | 281 | IPR011598 | GO:0046983 | |
Vvi6g164 | 297 | Pfam | Helix-loop-helix DNA-binding domain | 230 | 276 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi6g164 | Vvi8g1384 | ECH | |
Vvi6g164 | Vvi8g1193 | ECH | |
Vvi6g164 | Vvi13g1179 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14912 | PF00010 | HLH | 5.20E-10 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g164 | - | - | vvi:100253656 | 597.43 |