Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g168 ATGTCATCATGCTTGAAGATAGGACACGTGTCAACTTCTAATACAATGGAGAATGCCTCGCCGGAGCTACATCTGGACGACCTTCCGGCCATCCAAGTGCTCGGAAAAGGCGCCATGGGCACCGTTTTCCTCGTCCATGACCGCCTAGCTGACCCTTCTGCTCTCAGTCCTTTCGCTCTCAAAGTTGTCGATAAATTTTCTCACCACACCAAACTCGACGCCGACCGTCGTGCCCGCTGGGAGATCTCCGTTCTGAAACGTTTATCGAATCCAGAACACCCGTTTCTTCCCACCCTAATCGGATCTTTGGAGACTCCCGAATTCCTTGCCTGGGCCGTTCCGTTTTGCCCCGGTGGGGACCTCAATGTTCTCCGGTATCATCAGACAGACCGCGTCTTCTCGCCGTCGGTGATACGGTTCTACGTGGCCGAGATCATCTGCGCGCTCGAGCACTTACATAGCATGGGCATTGCGTACCGTGATCTCAAGCCAGAGAACGTGTTGATACAGCAGTCAGGTCACGTGACGCTCACGGACTTCGATCTTTCCCGAAGCCTGAAGCCGAGAACGAGCTTCTCGAACGGGGAACGGTCGAACTCGTTCGTGGGGACGGAAGAGTATGTGTCGCCGGAGGTGGTCCGCGGCGACGGACACGAGTTCGCCGTTGATTGGTGGGCTTTGGGGATTCTCACGTACGAGATGCTCTACGGAACGACGCCGTTTAAAGGGAAAAATCGAAAAGAAACATTTCGAAATGTTTTAATGAAAACCCCAGAGTTCATCGGAAAACGGACGGCCCTCACTGACTTGATCGGACGGCTGTTAGAGAAGGACCCCACAAAACGATTGGGATACAACAGAGGCGCGTCGGAGATCAAACAGCACGTGTTCTTCCGAGGATTACAGTGGGACAAGCTAACAGAGGTATTAAGGCCGCCGTTTCTGCCGTCAATGGACGATGAACTTTTAACGGAGAATATAACGGCAGATGAGTTCGATATAAGAGAATACTTTCAGAAAACAAAGGTAAAACCCTCACTTACGCCGTCAACGTCATCCAGAAGCATGTTTTCCACGATATTTTCCAATTTAGTTCGAAAGTGGTTAAAGAAGTAA 1116 51.25 MSSCLKIGHVSTSNTMENASPELHLDDLPAIQVLGKGAMGTVFLVHDRLADPSALSPFALKVVDKFSHHTKLDADRRARWEISVLKRLSNPEHPFLPTLIGSLETPEFLAWAVPFCPGGDLNVLRYHQTDRVFSPSVIRFYVAEIICALEHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRSLKPRTSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLMKTPEFIGKRTALTDLIGRLLEKDPTKRLGYNRGASEIKQHVFFRGLQWDKLTEVLRPPFLPSMDDELLTENITADEFDIREYFQKTKVKPSLTPSTSSRSMFSTIFSNLVRKWLKK* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2201085 2202854 - Vvi6g168 Vvi6g168 787745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g168 371 SMART serkin_6 28 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g168 371 ProSiteProfiles AGC-kinase C-terminal domain profile. 299 371 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi6g168 371 SUPERFAMILY Protein kinase-like (PK-like) 26 358 IPR011009 -
Vvi6g168 371 Gene3D Transferase(Phosphotransferase) domain 1 120 317 - -
Vvi6g168 371 Gene3D Phosphorylase Kinase; domain 1 25 329 - -
Vvi6g168 371 Pfam Protein kinase domain 31 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g168 371 PANTHER FLIPPASE KINASE 1-RELATED 23 188 - -
Vvi6g168 371 PANTHER FLIPPASE KINASE 1-RELATED 193 345 - -
Vvi6g168 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vvi6g168 371 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
Vvi6g168 371 ProSiteProfiles Protein kinase domain profile. 28 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g168 371 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 193 345 - -
Vvi6g168 371 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 23 188 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76693 PF00069 Pkinase 1.40E-55 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g168 - K08286 vvi:100241690 639.417