Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g170 ATGAACTCAAACAACTGGCTATCTTTTCCTCTTTCTCCCACTCATTCCTCTTTGCCACTAAATCTACATGCATCCCAGGCTCAGCAGTTTTCTCTAGGGTTAGTGAATGATAATATGGAAAGCCCATTCCAAAACCAAGAGTGGAATTTAATCAACTCACACGGCAGCAGCGAAGTCCCAAAGATTGCAGATTTTCTTGGTGTGAGCAAATCTGAAAACCAGGCAGATCTTGAGGCTTTTAATGAAATTCAGGCGAATGATTCTGATTACTTTTTCCCAAACAACAGCCTCCTGCCGGTTCCAAACCCCGTAGCAGCAGCAGCAGTAGTAGCCAGTCCCAATAGCTATGAGTTTCAAGAAAACAATAACAATTTGCAGTCACTGACATTGTCCATGGGTAGTGGTAAAGGTTCAACATGTGAAACCAGTGGCAACAGCAGTACTAGCATTGTGGAAGCTGCCCCCAGAAGGACATTGGATACATTTGGGCAAAGAACATCAATATACCGGGGTGTAACCAGGCATAGATGGACAGGAAGGTATGAAGCTCACCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGCAGGTGGGTATGACAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCCGCCTTGAAGTACTGGGGAACATCCACAACTACCAATTTCCCGATCAGTAACTATGAGAGGGAACTGGAGGAGATGAAGCACATGACCAGACAAGAATTTGTGGCCTCCATTAGAAGGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAGGCATCATCAACATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCCGGAAACAAAGACCTCTATTTGGGAACTTTTAGTACTGAGGAGGAAGCTGCAGAAGCCTATGATATTGCAGCAATAAAGTTCAGAGGCCTTAATGCAGTGACCAACTTTGACATGAATCGATACGATGTGAAGAGCATTCTTGAAAGCAACACTCTTCCGATAGGTGGGGGAGCGGCCAAGCGGCTAAAGGAGGCTCAAGCAATTGAATCATCGAGAAAACGGGAAGAAATGATAGCCCTAGGTTCAAGCTTCCAATATGGGAGCTCGAGCTCCAGCAGGTTACAGACATATCCTCTAATGCAGCAGCAGTTTGAGCAACCTCAGCCTTTACTAACATTACAGAACCAAGAACCATTACTAACTTTGCAAAACCCTGAAATTTCTCAGTACCCCCAAGACTCCCAGTTTCACCAAAACTACATCCAAACTCAGTTGCAGTTGCACCAGCAATCTGGGTCGTACCTGAACCATTCAAGCCAAAGTCCTCAGTTCTACAACAGTTACCTCCACAACAACCCGGCTCTTCTTCATGGGCTGATGAGTATGGGCTCTTCTTCATCTGTCATGGAGAATAATGGGAGTTCTAGTGGGAGTTACAATGGAGGATACTTCAATAATGGACTTGGGGAGCTTCCCCTCATCAAGGTTGATTACGATATGCCGGCCGCAGGCTATGGCAGCTGGTCAGGTGACTCAGTTCAGGGACAGAATGCTGGAGTTTTTACAATGTGGAATGACTGA 1608 45.46 MNSNNWLSFPLSPTHSSLPLNLHASQAQQFSLGLVNDNMESPFQNQEWNLINSHGSSEVPKIADFLGVSKSENQADLEAFNEIQANDSDYFFPNNSLLPVPNPVAAAAVVASPNSYEFQENNNNLQSLTLSMGSGKGSTCETSGNSSTSIVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQAGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYERELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKREEMIALGSSFQYGSSSSSRLQTYPLMQQQFEQPQPLLTLQNQEPLLTLQNPEISQYPQDSQFHQNYIQTQLQLHQQSGSYLNHSSQSPQFYNSYLHNNPALLHGLMSMGSSSSVMENNGSSSGSYNGGYFNNGLGELPLIKVDYDMPAAGYGSWSGDSVQGQNAGVFTMWND* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2228789 2231610 - Vvi6g170 Vvi6g170 787747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g170 535 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Vvi6g170 535 CDD AP2 167 234 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 CDD AP2 267 326 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 ProSiteProfiles AP2/ERF domain profile. 168 232 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 Pfam AP2 domain 269 318 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 Pfam AP2 domain 168 224 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 Gene3D AP2/ERF domain 168 234 IPR036955 GO:0003700|GO:0006355
Vvi6g170 535 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Vvi6g170 535 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 505 - -
Vvi6g170 535 SUPERFAMILY DNA-binding domain 167 234 IPR016177 GO:0003677
Vvi6g170 535 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 505 - -
Vvi6g170 535 SMART rav1_2 168 238 IPR001471 GO:0003700|GO:0006355
Vvi6g170 535 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14913 PF00847 AP2 8.90E-10 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g170 K09285 - vvi:100256966 981.474