Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g176 ATGACCGATCCCTACTCCAATTACTCCAATGGATGGTTCAACCTCAATCCTCTTTATCACATCTCTTCTTCCCCTTCTTCTTCCGATCAATCTTTGTGTTCTCCTCGGTATGACTTCAACAAATTGTACTACAATAACTTCAACACCAACAACTATCATTACTCACCCCCCTCTCCCCCTCTCAGAGAAGCTCTTCCCCTCCTCAGTTTAGGCCCAACAAGGTATGATGAACAAGAGTCCTCCTGCAATACTGCCATGGAAGTGGACATGAACAAGGGGAAGGAAGAGACCACCTTATCCAGCTCTGCTGATGATGAAACTGTGACAGTAGCTCTACATTTAGGGCTTCCAAGTCCTAGTTCTACGGATCTCATCTCAAGGCTCTCCTCTTCAGAGACAGAAGACAAGGAAGAAGTCACTGTTGCGTCTGGGTATTCTTCCACAGGCAGTACTCTCATCAAGGGTCAGTATTGGATCCCAACGCCTTCTCAGATTCTGATTGGTCCTACTCAGTTTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTGCACCCGGGTGCAGGAACAACATCGATCATCCAAGATCAAGACCACTCAAAGACTTCAGAACCCTTCAGACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGGAAGTGTGGTAAGGCCTTTGCTGTGAGAGGTGACTGGAGAACCCACGAGAAGAACTGTGGGAAACTTTGGTACTGTGCTTGTGGGTCAGATTTCAAGCACAAGAGGTCCCTCAAAGATCATATCAAGGCATTTGGGCATGGCCATGCAGCTTATGGCATCGACTGCTTCGAAGAAGAGGATGAACCGGCATCTGAAATTGAGCAAGACAACGAATCCTCGCATATTAGCAATGCAATGATGAATATACTCAAAACAGTTGTTGTACCCATATGTTTTCATTTATTGCTAAACAAATCAATGAGATGA 1083 45.61 MTDPYSNYSNGWFNLNPLYHISSSPSSSDQSLCSPRYDFNKLYYNNFNTNNYHYSPPSPPLREALPLLSLGPTRYDEQESSCNTAMEVDMNKGKEETTLSSSADDETVTVALHLGLPSPSSTDLISRLSSSETEDKEEVTVASGYSSTGSTLIKGQYWIPTPSQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCFCCAPGCRNNIDHPRSRPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIKAFGHGHAAYGIDCFEEEDEPASEIEQDNESSHISNAMMNILKTVVVPICFHLLLNKSMR* 361
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2295698 2298207 - Vvi6g176 Vvi6g176 787753
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g176 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 276 IPR013087 -
Vvi6g176 360 Gene3D Classic Zinc Finger 234 310 - -
Vvi6g176 360 PANTHER ZINC FINGER PROTEIN WIP2 1 332 IPR043584 GO:0003700|GO:0010468
Vvi6g176 360 SMART c2h2final6 172 194 IPR013087 -
Vvi6g176 360 SMART c2h2final6 256 276 IPR013087 -
Vvi6g176 360 SMART c2h2final6 282 305 IPR013087 -
Vvi6g176 360 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 332 - -
Vvi6g176 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Vvi6g176 360 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Vvi6g176 360 SUPERFAMILY beta-beta-alpha zinc fingers 239 276 IPR036236 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi6g176 Vvi13g1163 ECH
Vvi6g176 Vvi8g1404 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14914 None None None None Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g176 - - vvi:100245035 697.582