Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi6g176 | ATGACCGATCCCTACTCCAATTACTCCAATGGATGGTTCAACCTCAATCCTCTTTATCACATCTCTTCTTCCCCTTCTTCTTCCGATCAATCTTTGTGTTCTCCTCGGTATGACTTCAACAAATTGTACTACAATAACTTCAACACCAACAACTATCATTACTCACCCCCCTCTCCCCCTCTCAGAGAAGCTCTTCCCCTCCTCAGTTTAGGCCCAACAAGGTATGATGAACAAGAGTCCTCCTGCAATACTGCCATGGAAGTGGACATGAACAAGGGGAAGGAAGAGACCACCTTATCCAGCTCTGCTGATGATGAAACTGTGACAGTAGCTCTACATTTAGGGCTTCCAAGTCCTAGTTCTACGGATCTCATCTCAAGGCTCTCCTCTTCAGAGACAGAAGACAAGGAAGAAGTCACTGTTGCGTCTGGGTATTCTTCCACAGGCAGTACTCTCATCAAGGGTCAGTATTGGATCCCAACGCCTTCTCAGATTCTGATTGGTCCTACTCAGTTTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCAGAGTCTCTGAGGGGAACACAGCCAACGGCCATGCTTAAACTCCCATGCTTTTGCTGTGCACCCGGGTGCAGGAACAACATCGATCATCCAAGATCAAGACCACTCAAAGACTTCAGAACCCTTCAGACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGGAAGTGTGGTAAGGCCTTTGCTGTGAGAGGTGACTGGAGAACCCACGAGAAGAACTGTGGGAAACTTTGGTACTGTGCTTGTGGGTCAGATTTCAAGCACAAGAGGTCCCTCAAAGATCATATCAAGGCATTTGGGCATGGCCATGCAGCTTATGGCATCGACTGCTTCGAAGAAGAGGATGAACCGGCATCTGAAATTGAGCAAGACAACGAATCCTCGCATATTAGCAATGCAATGATGAATATACTCAAAACAGTTGTTGTACCCATATGTTTTCATTTATTGCTAAACAAATCAATGAGATGA | 1083 | 45.61 | MTDPYSNYSNGWFNLNPLYHISSSPSSSDQSLCSPRYDFNKLYYNNFNTNNYHYSPPSPPLREALPLLSLGPTRYDEQESSCNTAMEVDMNKGKEETTLSSSADDETVTVALHLGLPSPSSTDLISRLSSSETEDKEEVTVASGYSSTGSTLIKGQYWIPTPSQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCFCCAPGCRNNIDHPRSRPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCACGSDFKHKRSLKDHIKAFGHGHAAYGIDCFEEEDEPASEIEQDNESSHISNAMMNILKTVVVPICFHLLLNKSMR* | 361 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2295698 | 2298207 | - | Vvi6g176 | Vvi6g176 | 787753 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi6g176 | 360 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 256 | 276 | IPR013087 | - | |
| Vvi6g176 | 360 | Gene3D | Classic Zinc Finger | 234 | 310 | - | - | |
| Vvi6g176 | 360 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 332 | IPR043584 | GO:0003700|GO:0010468 | |
| Vvi6g176 | 360 | SMART | c2h2final6 | 172 | 194 | IPR013087 | - | |
| Vvi6g176 | 360 | SMART | c2h2final6 | 256 | 276 | IPR013087 | - | |
| Vvi6g176 | 360 | SMART | c2h2final6 | 282 | 305 | IPR013087 | - | |
| Vvi6g176 | 360 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 332 | - | - | |
| Vvi6g176 | 360 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 172 | 199 | IPR013087 | - | |
| Vvi6g176 | 360 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 174 | 194 | IPR013087 | - | |
| Vvi6g176 | 360 | SUPERFAMILY | beta-beta-alpha zinc fingers | 239 | 276 | IPR036236 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Vvi6g176 | Vvi13g1163 | ECH | |
| Vvi6g176 | Vvi8g1404 | ECH |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 14914 | None | None | None | None | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi6g176 | - | - | vvi:100245035 | 697.582 |