Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g178 ATGGAGATCAATGGAAAAGATGAACTTAAGTTGCCTCTGTTGCAGCCTCTGGATGGTGTTGTAGTTACTGCATCTCAACCAAGTACCATCATAGACAAGAAAATTAAGACGGTTATGTTCAAAATAGGGAATATAGCGTGTGCATCTTGTGCAACATCCATAGAATCTGTACTTCTTGAGCTTAATGGGGTTGAGAGTGTTATGGTGTCGGTGCTTCAAGGTCAGGCTGCTGTTAAATACATACCAGAACTCATTACGGCAAATGCAATTAAAGAAGCCATAAAAGATGCAGGTTTTCCAGTTGATGACCTGCCAGAACAAGAAATAGCAGTGTGCCGTCTCAGAATTAAAGGCATGGCATGTACCAGCTGTTCTGAATCGGTTGAACATGCTCTTTCATTGGTTGATGGAGTTAAAAAGGCTGTGGTGGGTCTAGCTCTTGAGGAAGCAAAGGTCCACTTTGATCCAAGCATCACTGACTTCAATCACATTGTTGAAGCAGTAGAGGATGCTGGCTTTGGAGCTGATAGAAACAGAACGTCAACAGGAAATTTGGATGTACAGAAACCAGTTTATCTGGAGCTATGGATCCTTTGCACTCCGGTGCAATTCATCATTGGTAGAAGATTTTATGTGGGTTCATATCATGCATTGAGACGAAGATCTGCTAATATGGAAGTTCTTGTTGCACTGGGCACCAATGCTGCTTATTTTTACTCTGTTTATATAGTAATAAAAGCATTGACTACAGATATGTTTGAAGGAAACGATTTCTTTGAGACTAGTGCAATGTTGATATCCTTTATTCTGCTAGGAAAATATTTGGAGGTTGTAGCTAAGGGGAAAACATCAGATGCCTTAGCAAAGCTGACAGACCTTGCTCCTGATACGGCTCATCTGATAGCATTGGATGATGAAGATAATGTAATATCAGATATCGAAATTAGCACTCAATTGATACAAAGGAATGACATACTCAAGATTGTTCCAGGGGAAAAAGTTCCTGTTGATGGCATTGTTGTAAACGGTCAAAGCCATGTGAATGAGAGCATGATCACTGGAGAAGCAAGGCCAATTGCTAAGAAACCTGGCGATAAGGTTATTGGTGGGACTGTCAATGAGAATGGATGCATACTGGTTAAGGCTACTCATGTTGGATCAGAGACTGCGCTCTCCCAAATTGTTCAACTAGTGGAAGCGGCTCAGCTTGCCAGAGCACCTGTTCAGAAATTAGCTGACCAGATTTCAAGGTTTTTTGTACCTACTGTTGTTGTAGTAGCATTTATAACATGGGTGGCTTGGTTCACCCTAGGAGAACTTGGCAGCTACCCGAAACATTGGATGCCAAAAGGCATGGATGGATTTGAGCTTGCACTGCAGTTTGCAATTTCAGTGCTGGTGGTGGCTTGTCCATGTGCTCTGGGACTAGCAACCCCTACAGCGGTTATGGTGGCCACAGGGAAGGGTGCTTCGCTAGGTGTGCTCATCAAGGGTGGAAATGCACTTGAGAAGGCGCACAAGGTGAAAACAATTGTCTTTGATAAGACAGGGACGCTGACAGTAGGAAAACCAGTGGTTGTTAGTGCAGTGCTCTTTTCCAGTTTTTCGATGGAGGAATTCTGTGACATGACTACTGCTGCAGAGGCAAATAGTGAGCATCCATTAGCAAAAGCTGTAGTGGAGTATGCTAAGAGACTGCGCCAGAAGTTTGGCCCTCAAACGGAACAAATGACAGATATTAAGGAGTTTGAGGTGCACCCAGGAGCTGGGGTTAGCGGAAAAGTTGGTGACAAATTAGTCTTGGTTGGGAACAAGAGGCTTATGCAAGATTCTAGTGTGCCAGTTAGTCCTGAGGTTGAGAACCACATTGCAGAAACTGAGAATCTGGCTCGCACGTGTGTGCTAGTGGCAATTAATGGAAAGGTTGCTGGAGCTTTTGCTGTGACTGATCCAGTGAAGCCGGAGGCTGGGCGTGTAATATCTTTTCTCCACTCGATGGACATCTCAACTGTCATGATGACTGGTGATAACTGGGCTACAGCAACCGCTATAGCAAAGGAGGTTGGAATTAAGGAGGTGTATGCTGAGACAGACCCACTGGGGAAAGCCGAAAGGATTAAAAATTTACAGATGAAAGGGATGACCGTGGCAATGGTGGGTGATGGAATAAACGATTCCCCAGCTTTGGTTGCAGCTGATGTTGGCATGGCAATTGGTGCAGGGACTGATGTAGCTATAGAAGCAGCTGACATAGTTCTTATCAAGAGCAACTTGGAAGACGTAATCACAGCGTTAGACCTCTCCAGAAAGACAATGTCAAGGATCCGGCTGAACTATGTTTGGGCCCTTGGCTACAATGTGCTCGCCATGCCAGTAGCCGCTGGAATCCTGTTCCCCTTAGATGGAATCCGCATACCACCTTGGCTTGCTGGTGCTTGCATGGCTGCTTCATCCGTGAGCGTGGTTTGCTCTTCTCTCCTGTTGCAGTCTTACAAGAAACCTTTGCATGTTGAAGATGCTCGAGATGTAAGTCACAACTCGAATTCCAAATGA 2553 44.73 MEINGKDELKLPLLQPLDGVVVTASQPSTIIDKKIKTVMFKIGNIACASCATSIESVLLELNGVESVMVSVLQGQAAVKYIPELITANAIKEAIKDAGFPVDDLPEQEIAVCRLRIKGMACTSCSESVEHALSLVDGVKKAVVGLALEEAKVHFDPSITDFNHIVEAVEDAGFGADRNRTSTGNLDVQKPVYLELWILCTPVQFIIGRRFYVGSYHALRRRSANMEVLVALGTNAAYFYSVYIVIKALTTDMFEGNDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLIALDDEDNVISDIEISTQLIQRNDILKIVPGEKVPVDGIVVNGQSHVNESMITGEARPIAKKPGDKVIGGTVNENGCILVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPTVVVVAFITWVAWFTLGELGSYPKHWMPKGMDGFELALQFAISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTIVFDKTGTLTVGKPVVVSAVLFSSFSMEEFCDMTTAAEANSEHPLAKAVVEYAKRLRQKFGPQTEQMTDIKEFEVHPGAGVSGKVGDKLVLVGNKRLMQDSSVPVSPEVENHIAETENLARTCVLVAINGKVAGAFAVTDPVKPEAGRVISFLHSMDISTVMMTGDNWATATAIAKEVGIKEVYAETDPLGKAERIKNLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSNLEDVITALDLSRKTMSRIRLNYVWALGYNVLAMPVAAGILFPLDGIRIPPWLAGACMAASSVSVVCSSLLLQSYKKPLHVEDARDVSHNSNSK* 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2342415 2350871 + Vvi6g178 Vvi6g178 787755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g178 850 Pfam haloacid dehalogenase-like hydrolase 508 733 - -
Vvi6g178 850 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 265 797 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi6g178 850 SUPERFAMILY HMA, heavy metal-associated domain 32 102 IPR036163 GO:0046872
Vvi6g178 850 CDD HMA 114 175 IPR006121 GO:0046872
Vvi6g178 850 TIGRFAM TIGR00003: copper ion binding protein 114 174 IPR006122 GO:0005507
Vvi6g178 850 TIGRFAM TIGR00003: copper ion binding protein 40 101 IPR006122 GO:0005507
Vvi6g178 850 SFLD Haloacid Dehalogenase 494 771 - -
Vvi6g178 850 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 225 828 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vvi6g178 850 Pfam Heavy-metal-associated domain 114 173 IPR006121 GO:0046872
Vvi6g178 850 Pfam Heavy-metal-associated domain 40 99 IPR006121 GO:0046872
Vvi6g178 850 Gene3D - 479 776 IPR023214 -
Vvi6g178 850 ProSiteProfiles Heavy-metal-associated domain profile. 37 103 IPR006121 GO:0046872
Vvi6g178 850 ProSiteProfiles Heavy-metal-associated domain profile. 111 177 IPR006121 GO:0046872
Vvi6g178 850 SUPERFAMILY HAD-like 510 825 IPR036412 -
Vvi6g178 850 SFLD p-type atpase 494 771 IPR044492 -
Vvi6g178 850 Gene3D - 29 106 - -
Vvi6g178 850 Gene3D - 107 176 - -
Vvi6g178 850 PANTHER ATP7, ISOFORM B 195 840 - -
Vvi6g178 850 PANTHER ATP7, ISOFORM B 1 179 - -
Vvi6g178 850 SUPERFAMILY HMA, heavy metal-associated domain 107 175 IPR036163 GO:0046872
Vvi6g178 850 Gene3D - 598 650 IPR023299 GO:0000166
Vvi6g178 850 Gene3D - 519 597 IPR023299 GO:0000166
Vvi6g178 850 ProSitePatterns Heavy-metal-associated domain. 42 71 IPR017969 GO:0046872
Vvi6g178 850 CDD P-type_ATPase_Cu-like 195 815 - -
Vvi6g178 850 SUPERFAMILY Calcium ATPase, transduction domain A 313 398 IPR008250 -
Vvi6g178 850 Pfam E1-E2 ATPase 294 490 - -
Vvi6g178 850 ProSitePatterns Heavy-metal-associated domain. 116 145 IPR017969 GO:0046872
Vvi6g178 850 SUPERFAMILY Calcium ATPase, transmembrane domain M 249 789 IPR023298 -
Vvi6g178 850 PRINTS H+-transporting ATPase (proton pump) signature 719 735 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi6g178 850 PRINTS H+-transporting ATPase (proton pump) signature 750 775 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi6g178 850 CDD HMA 39 101 IPR006121 GO:0046872
Vvi6g178 850 ProSitePatterns E1-E2 ATPases phosphorylation site. 514 520 IPR018303 -
Vvi6g178 850 Gene3D - 280 402 - -
Vvi6g178 850 PRINTS P-type cation-transporting ATPase superfamily signature 348 362 - -
Vvi6g178 850 PRINTS P-type cation-transporting ATPase superfamily signature 512 526 - -
Vvi6g178 850 PRINTS P-type cation-transporting ATPase superfamily signature 644 655 - -
Vvi6g178 850 PRINTS P-type cation-transporting ATPase superfamily signature 666 676 - -
Vvi6g178 850 PRINTS P-type cation-transporting ATPase superfamily signature 719 738 - -
Vvi6g178 850 PRINTS P-type cation-transporting ATPase superfamily signature 742 754 - -
Vvi6g178 850 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 195 840 - -
Vvi6g178 850 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 179 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g178 K17686 - vvi:100265637 1293.87