Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g178 | ATGGAGATCAATGGAAAAGATGAACTTAAGTTGCCTCTGTTGCAGCCTCTGGATGGTGTTGTAGTTACTGCATCTCAACCAAGTACCATCATAGACAAGAAAATTAAGACGGTTATGTTCAAAATAGGGAATATAGCGTGTGCATCTTGTGCAACATCCATAGAATCTGTACTTCTTGAGCTTAATGGGGTTGAGAGTGTTATGGTGTCGGTGCTTCAAGGTCAGGCTGCTGTTAAATACATACCAGAACTCATTACGGCAAATGCAATTAAAGAAGCCATAAAAGATGCAGGTTTTCCAGTTGATGACCTGCCAGAACAAGAAATAGCAGTGTGCCGTCTCAGAATTAAAGGCATGGCATGTACCAGCTGTTCTGAATCGGTTGAACATGCTCTTTCATTGGTTGATGGAGTTAAAAAGGCTGTGGTGGGTCTAGCTCTTGAGGAAGCAAAGGTCCACTTTGATCCAAGCATCACTGACTTCAATCACATTGTTGAAGCAGTAGAGGATGCTGGCTTTGGAGCTGATAGAAACAGAACGTCAACAGGAAATTTGGATGTACAGAAACCAGTTTATCTGGAGCTATGGATCCTTTGCACTCCGGTGCAATTCATCATTGGTAGAAGATTTTATGTGGGTTCATATCATGCATTGAGACGAAGATCTGCTAATATGGAAGTTCTTGTTGCACTGGGCACCAATGCTGCTTATTTTTACTCTGTTTATATAGTAATAAAAGCATTGACTACAGATATGTTTGAAGGAAACGATTTCTTTGAGACTAGTGCAATGTTGATATCCTTTATTCTGCTAGGAAAATATTTGGAGGTTGTAGCTAAGGGGAAAACATCAGATGCCTTAGCAAAGCTGACAGACCTTGCTCCTGATACGGCTCATCTGATAGCATTGGATGATGAAGATAATGTAATATCAGATATCGAAATTAGCACTCAATTGATACAAAGGAATGACATACTCAAGATTGTTCCAGGGGAAAAAGTTCCTGTTGATGGCATTGTTGTAAACGGTCAAAGCCATGTGAATGAGAGCATGATCACTGGAGAAGCAAGGCCAATTGCTAAGAAACCTGGCGATAAGGTTATTGGTGGGACTGTCAATGAGAATGGATGCATACTGGTTAAGGCTACTCATGTTGGATCAGAGACTGCGCTCTCCCAAATTGTTCAACTAGTGGAAGCGGCTCAGCTTGCCAGAGCACCTGTTCAGAAATTAGCTGACCAGATTTCAAGGTTTTTTGTACCTACTGTTGTTGTAGTAGCATTTATAACATGGGTGGCTTGGTTCACCCTAGGAGAACTTGGCAGCTACCCGAAACATTGGATGCCAAAAGGCATGGATGGATTTGAGCTTGCACTGCAGTTTGCAATTTCAGTGCTGGTGGTGGCTTGTCCATGTGCTCTGGGACTAGCAACCCCTACAGCGGTTATGGTGGCCACAGGGAAGGGTGCTTCGCTAGGTGTGCTCATCAAGGGTGGAAATGCACTTGAGAAGGCGCACAAGGTGAAAACAATTGTCTTTGATAAGACAGGGACGCTGACAGTAGGAAAACCAGTGGTTGTTAGTGCAGTGCTCTTTTCCAGTTTTTCGATGGAGGAATTCTGTGACATGACTACTGCTGCAGAGGCAAATAGTGAGCATCCATTAGCAAAAGCTGTAGTGGAGTATGCTAAGAGACTGCGCCAGAAGTTTGGCCCTCAAACGGAACAAATGACAGATATTAAGGAGTTTGAGGTGCACCCAGGAGCTGGGGTTAGCGGAAAAGTTGGTGACAAATTAGTCTTGGTTGGGAACAAGAGGCTTATGCAAGATTCTAGTGTGCCAGTTAGTCCTGAGGTTGAGAACCACATTGCAGAAACTGAGAATCTGGCTCGCACGTGTGTGCTAGTGGCAATTAATGGAAAGGTTGCTGGAGCTTTTGCTGTGACTGATCCAGTGAAGCCGGAGGCTGGGCGTGTAATATCTTTTCTCCACTCGATGGACATCTCAACTGTCATGATGACTGGTGATAACTGGGCTACAGCAACCGCTATAGCAAAGGAGGTTGGAATTAAGGAGGTGTATGCTGAGACAGACCCACTGGGGAAAGCCGAAAGGATTAAAAATTTACAGATGAAAGGGATGACCGTGGCAATGGTGGGTGATGGAATAAACGATTCCCCAGCTTTGGTTGCAGCTGATGTTGGCATGGCAATTGGTGCAGGGACTGATGTAGCTATAGAAGCAGCTGACATAGTTCTTATCAAGAGCAACTTGGAAGACGTAATCACAGCGTTAGACCTCTCCAGAAAGACAATGTCAAGGATCCGGCTGAACTATGTTTGGGCCCTTGGCTACAATGTGCTCGCCATGCCAGTAGCCGCTGGAATCCTGTTCCCCTTAGATGGAATCCGCATACCACCTTGGCTTGCTGGTGCTTGCATGGCTGCTTCATCCGTGAGCGTGGTTTGCTCTTCTCTCCTGTTGCAGTCTTACAAGAAACCTTTGCATGTTGAAGATGCTCGAGATGTAAGTCACAACTCGAATTCCAAATGA | 2553 | 44.73 | MEINGKDELKLPLLQPLDGVVVTASQPSTIIDKKIKTVMFKIGNIACASCATSIESVLLELNGVESVMVSVLQGQAAVKYIPELITANAIKEAIKDAGFPVDDLPEQEIAVCRLRIKGMACTSCSESVEHALSLVDGVKKAVVGLALEEAKVHFDPSITDFNHIVEAVEDAGFGADRNRTSTGNLDVQKPVYLELWILCTPVQFIIGRRFYVGSYHALRRRSANMEVLVALGTNAAYFYSVYIVIKALTTDMFEGNDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLIALDDEDNVISDIEISTQLIQRNDILKIVPGEKVPVDGIVVNGQSHVNESMITGEARPIAKKPGDKVIGGTVNENGCILVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPTVVVVAFITWVAWFTLGELGSYPKHWMPKGMDGFELALQFAISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTIVFDKTGTLTVGKPVVVSAVLFSSFSMEEFCDMTTAAEANSEHPLAKAVVEYAKRLRQKFGPQTEQMTDIKEFEVHPGAGVSGKVGDKLVLVGNKRLMQDSSVPVSPEVENHIAETENLARTCVLVAINGKVAGAFAVTDPVKPEAGRVISFLHSMDISTVMMTGDNWATATAIAKEVGIKEVYAETDPLGKAERIKNLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSNLEDVITALDLSRKTMSRIRLNYVWALGYNVLAMPVAAGILFPLDGIRIPPWLAGACMAASSVSVVCSSLLLQSYKKPLHVEDARDVSHNSNSK* | 851 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2342415 | 2350871 | + | Vvi6g178 | Vvi6g178 | 787755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g178 | 850 | Pfam | haloacid dehalogenase-like hydrolase | 508 | 733 | - | - | |
Vvi6g178 | 850 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 265 | 797 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi6g178 | 850 | SUPERFAMILY | HMA, heavy metal-associated domain | 32 | 102 | IPR036163 | GO:0046872 | |
Vvi6g178 | 850 | CDD | HMA | 114 | 175 | IPR006121 | GO:0046872 | |
Vvi6g178 | 850 | TIGRFAM | TIGR00003: copper ion binding protein | 114 | 174 | IPR006122 | GO:0005507 | |
Vvi6g178 | 850 | TIGRFAM | TIGR00003: copper ion binding protein | 40 | 101 | IPR006122 | GO:0005507 | |
Vvi6g178 | 850 | SFLD | Haloacid Dehalogenase | 494 | 771 | - | - | |
Vvi6g178 | 850 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 225 | 828 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Vvi6g178 | 850 | Pfam | Heavy-metal-associated domain | 114 | 173 | IPR006121 | GO:0046872 | |
Vvi6g178 | 850 | Pfam | Heavy-metal-associated domain | 40 | 99 | IPR006121 | GO:0046872 | |
Vvi6g178 | 850 | Gene3D | - | 479 | 776 | IPR023214 | - | |
Vvi6g178 | 850 | ProSiteProfiles | Heavy-metal-associated domain profile. | 37 | 103 | IPR006121 | GO:0046872 | |
Vvi6g178 | 850 | ProSiteProfiles | Heavy-metal-associated domain profile. | 111 | 177 | IPR006121 | GO:0046872 | |
Vvi6g178 | 850 | SUPERFAMILY | HAD-like | 510 | 825 | IPR036412 | - | |
Vvi6g178 | 850 | SFLD | p-type atpase | 494 | 771 | IPR044492 | - | |
Vvi6g178 | 850 | Gene3D | - | 29 | 106 | - | - | |
Vvi6g178 | 850 | Gene3D | - | 107 | 176 | - | - | |
Vvi6g178 | 850 | PANTHER | ATP7, ISOFORM B | 195 | 840 | - | - | |
Vvi6g178 | 850 | PANTHER | ATP7, ISOFORM B | 1 | 179 | - | - | |
Vvi6g178 | 850 | SUPERFAMILY | HMA, heavy metal-associated domain | 107 | 175 | IPR036163 | GO:0046872 | |
Vvi6g178 | 850 | Gene3D | - | 598 | 650 | IPR023299 | GO:0000166 | |
Vvi6g178 | 850 | Gene3D | - | 519 | 597 | IPR023299 | GO:0000166 | |
Vvi6g178 | 850 | ProSitePatterns | Heavy-metal-associated domain. | 42 | 71 | IPR017969 | GO:0046872 | |
Vvi6g178 | 850 | CDD | P-type_ATPase_Cu-like | 195 | 815 | - | - | |
Vvi6g178 | 850 | SUPERFAMILY | Calcium ATPase, transduction domain A | 313 | 398 | IPR008250 | - | |
Vvi6g178 | 850 | Pfam | E1-E2 ATPase | 294 | 490 | - | - | |
Vvi6g178 | 850 | ProSitePatterns | Heavy-metal-associated domain. | 116 | 145 | IPR017969 | GO:0046872 | |
Vvi6g178 | 850 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 249 | 789 | IPR023298 | - | |
Vvi6g178 | 850 | PRINTS | H+-transporting ATPase (proton pump) signature | 719 | 735 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi6g178 | 850 | PRINTS | H+-transporting ATPase (proton pump) signature | 750 | 775 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi6g178 | 850 | CDD | HMA | 39 | 101 | IPR006121 | GO:0046872 | |
Vvi6g178 | 850 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 514 | 520 | IPR018303 | - | |
Vvi6g178 | 850 | Gene3D | - | 280 | 402 | - | - | |
Vvi6g178 | 850 | PRINTS | P-type cation-transporting ATPase superfamily signature | 348 | 362 | - | - | |
Vvi6g178 | 850 | PRINTS | P-type cation-transporting ATPase superfamily signature | 512 | 526 | - | - | |
Vvi6g178 | 850 | PRINTS | P-type cation-transporting ATPase superfamily signature | 644 | 655 | - | - | |
Vvi6g178 | 850 | PRINTS | P-type cation-transporting ATPase superfamily signature | 666 | 676 | - | - | |
Vvi6g178 | 850 | PRINTS | P-type cation-transporting ATPase superfamily signature | 719 | 738 | - | - | |
Vvi6g178 | 850 | PRINTS | P-type cation-transporting ATPase superfamily signature | 742 | 754 | - | - | |
Vvi6g178 | 850 | PANTHER | COPPER-TRANSPORTING ATPASE HMA5-RELATED | 195 | 840 | - | - | |
Vvi6g178 | 850 | PANTHER | COPPER-TRANSPORTING ATPASE HMA5-RELATED | 1 | 179 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g178 | K17686 | - | vvi:100265637 | 1293.87 |