Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g183 ATGAGCTGGAATCCACAAATGGATGCTCATTACATGAACACTAGCTATCCTTATAGTACAGTCGGAAGTTTTATGGATTATTTTGAAGGTCTTGCTTATGAACATGTGAATTTCATCTTTGCTACTGCTTCACACGGTCAGGAGAGTCCATATGCATCATCCATGAATACGAGTTTATACAAATTTGGGTTATCTGAAACAGGGAGTACTTCTTATTATGATTATGATCAGGCTTATGTGGTAAATGATCACGTTCCGGGAATTAGTGAATATAGAAGAACTCCAGAAAACTCTTCAGCCATTACCACGGACCAGATTCCAACAGTAAATACACAATGTGAAGGAAATACAAACACTACTACTACACATGCTACTCCAGTAGAATGCCCTCGGAGTCATCCCAATTCTCAGGATTATCAGGTCATTTGGCAAGACAACATTGATCCTGACAACATGACTTACGAGGAGTTACTAGAATTAGGTGAGGCAGTTGGAACTCAAAGTCGAGGCCTTTCTCAAGAACTTATTTCTTTGCTGCCAATTTCTAAGTACAAGTGTGGATTCTTCACAAGAAAGAAATCACGATGCGAGAGATGTGTCATTTGCCAAATGGAATATAAAAGACGTGATCGGCTGATCACTCTTCCATGCAAACATGTTTACCATGCTGCCTGCGGCACCAGATGGCTTAGCATCAACAAGGCTTGCCCCATTTGTTACACTGAGGTGATTGGTGAAGTACCAAAAATTGACAAATAA 759 40.18 MSWNPQMDAHYMNTSYPYSTVGSFMDYFEGLAYEHVNFIFATASHGQESPYASSMNTSLYKFGLSETGSTSYYDYDQAYVVNDHVPGISEYRRTPENSSAITTDQIPTVNTQCEGNTNTTTTHATPVECPRSHPNSQDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLSQELISLLPISKYKCGFFTRKKSRCERCVICQMEYKRRDRLITLPCKHVYHAACGTRWLSINKACPICYTEVIGEVPKIDK* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2374861 2382923 + Vvi6g183 Vvi6g183 787760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g183 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 247 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vvi6g183 252 ProSiteProfiles Zinc finger RING-type profile. 199 239 IPR001841 -
Vvi6g183 252 Pfam Ring finger domain 198 239 IPR001841 -
Vvi6g183 252 SMART ring_2 199 239 IPR001841 -
Vvi6g183 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 247 - -
Vvi6g183 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 244 IPR013083 -
Vvi6g183 252 SUPERFAMILY RING/U-box 198 244 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g183 Vvi13g1159 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g183 K19045 - vvi:100265517 513.842