Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g194 ATGTCCACATCCACATCCACATTAGACGCACGGTTCTGTTGTTTGCATTGCAAAACTTGCTTTGCTCCTTTCAATGGTTTGATTAAGGAACTTGCTTCACATCGGAGTAGGGAGAAGTGTTGGTTCTACACCATCCCTTTTGGGGGTATTGGCGAATCCGGGTTTGGGAGGTACCATGGGAAGTTCTCCTACGATACCTTCACATACGAGAAGGCGATCCTAAGAAGAAGCTTGCTTACTGAGTTCTGGCTTAGGTTTCCTCCATGGAATGACTTCAAGTTGGCACTCACCAAGTCAGCTTACAGCTTTGATTACTTTGGATTTCTGCTTAAAATCCATCCCCCATTCGATTTCCGGGGAAATTCATCCTCGTTTGATTTCCGAGAAAATCCATTCAAAACCCCCAAAGAAAACCAAAAAGTTTGCTTTTCTTTTGCTTCCTGTGTTTTCTGGATCTGTTTTAAGGGTCTCTTTGCTGTTGTGCCATTGGATTTAAATTTCACGAACCCTAAATCCACGATTTTTGAGCCAGATTTTGTATCCTGTGCGCGGGCTGTGATGGCTGAAACCCCCCGAAAATCCTTCCATTCCCCCAGAAAAGCCCATAAACCCTCTCCTTCAACTCCCATCATCCCTCAAACGCCGCAAACCGTAACTCCTAGTCGATCCTCGCGCCAAGTCTCAAGCCCAGATCCATCAGATCTTCGCCGTTCATCTCGCCGGTCGTCCCTGCAATTCTTGGAACCTGAAAAGCGCTCTTCAAAAGCCACAAAATATGTGAAAAAGGGTGAAAGATCGAAGCTTCCGGTCACTCCTGATGTGTCAGAGGCGCGGAAGAGGAAGAGCCCTGATGAGGGAAATGTGGTGACTAGGGCTAGGGTTTCGAGGAATGCGGGTTTGATGCGGAAGAAGCGGGTTTATTACAAGAAGGTTGTGTATGATGGGGGTGAATTTGCGGTGGGCGATGATGTGTATGTGAAAAGAAGGGAAAATGCGAGCTCGGATGATGAAGAATTGCAATGTGATGATTGTCTGGGTGGGTTTCATTTGAAGTGTTTGAAACCTCGGCTGAAGGAGGTTCCAGAAGGGGATTGGATATGCCAGTTTTGCGAGGCCCGGAAATTGGGTAAGGAAGTTGTGCTTCCAAAGCCACCCAAAGGGAAGAAACGGAAGAGAACTGCAAGGGAGAAGCTTCTTTCCAGTGATTTATGGACGGCTCATATTGAAAATATATGGAAAGAAGTGGATGGTACTTACTGGTTTCGTGGGCGATGGTATATCATCCCTGAAGAGACTGCAGCTGGAAGACAGTCGCATAATCTAAGAAGGGAGCTTTATAGGACAAATGATTTTGCTGACATTGAGATGGAATCCATCATTAGGCTTTGCTATGTAATGAGCCCAAAAGAATTTACCAAGGCCAATAATGAAGGTGATGATATTTTCTTATGTGAATATGAATATGACATACATTGGCACAGTTTCAAGCGTCTTGCAGAGATCAATAATGGTGAAGAAGGCAATGAAGAAGCTGACAATGATGTAGATTGGGATTATGGAAAGGACTCAGGCTCTGATACTGAAGAAGACATGGAATATGAAGAGGAAAATGTGAACAATTTACCCAGTGGACCATCCCCAGCTCATGCAGTTGCTGCAAATTCGTGGAAGGGAAGGATCTTTGGGCTAAAGAAAATTGGGACAAAGAAAATTCCAGGGCATGTGAGATGCCACAAGCAGACTGAACTTGAAAGAGCAAAAGCAACACTTCTGTTGGCAACTTTGCCCAAGTCTCTACCTTGCAGGACTAAGGAAATGGAAGAGATAACTGCATTTATAAAAGGTGCCATCTGCAATGATCAATGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTTTCAGTAATGAGAAATCTAAGGTCTGAAGTTGATGCAGGAAGCATAAAACCCTACTGTTTTGTGGATATTAATGGTCTAAAATTGGCATCACCAGAGAACATTTACAGGGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGGAGATCCGGCCTTGTATTCTACTTATTGATGAACTTGATCTTCTCGTAACCAGAAATCAGTCGGTTCTGTACAACATTCTTGATTGGCCTACTAAGCCACATTCCAAATTGATCGTGATAGGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACAGTTACAAGAAATCATTTCAAGTCGTCTTAAAGGAATTGATGCATTTGAAAGGCAAGCTATAGAATTTGCTTCAAGAAAGGTGGCAGCTATTTCTGGAGATGCACGTCGTGCTTTGGAGATATGTAGGCGTGCAGCAGAACTTGCAGATTATCATATTAAAAAGCTAACTTCACCTCCTGATTCTTCTTCTGAAGGAAAAGCTCTTGTTGGAATGGCAGAGGTAGAAGCAGCCATACAGGAAATGTTCCAGGCACCTCAAATTCAAGTGATGAAGAGTAGCTCAAAGCTGAGTAAAATCTTCTTGGTAGCAATGGTGCATGAACTCTATCAAACAGGAATGGCAGAGACTACTTTTAAAAAGTTGTCAGTGACTGTTTCATGCCTCTGTACAAGCAATGGAGAAAAGTTCCCTGGATGGGACACACTCTTGAGAGTTGGTTGTAAGCTTGGTGAATGCAGAATCATTCTATGTGAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCTAAGTATTTGTGA 2940 43.33 MSTSTSTLDARFCCLHCKTCFAPFNGLIKELASHRSREKCWFYTIPFGGIGESGFGRYHGKFSYDTFTYEKAILRRSLLTEFWLRFPPWNDFKLALTKSAYSFDYFGFLLKIHPPFDFRGNSSSFDFRENPFKTPKENQKVCFSFASCVFWICFKGLFAVVPLDLNFTNPKSTIFEPDFVSCARAVMAETPRKSFHSPRKAHKPSPSTPIIPQTPQTVTPSRSSRQVSSPDPSDLRRSSRRSSLQFLEPEKRSSKATKYVKKGERSKLPVTPDVSEARKRKSPDEGNVVTRARVSRNAGLMRKKRVYYKKVVYDGGEFAVGDDVYVKRRENASSDDEELQCDDCLGGFHLKCLKPRLKEVPEGDWICQFCEARKLGKEVVLPKPPKGKKRKRTAREKLLSSDLWTAHIENIWKEVDGTYWFRGRWYIIPEETAAGRQSHNLRRELYRTNDFADIEMESIIRLCYVMSPKEFTKANNEGDDIFLCEYEYDIHWHSFKRLAEINNGEEGNEEADNDVDWDYGKDSGSDTEEDMEYEEENVNNLPSGPSPAHAVAANSWKGRIFGLKKIGTKKIPGHVRCHKQTELERAKATLLLATLPKSLPCRTKEMEEITAFIKGAICNDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRSEVDAGSIKPYCFVDINGLKLASPENIYRVIYEALSGHRVGWKKALHLLNERFADESKIAKEEIRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDAFERQAIEFASRKVAAISGDARRALEICRRAAELADYHIKKLTSPPDSSSEGKALVGMAEVEAAIQEMFQAPQIQVMKSSSKLSKIFLVAMVHELYQTGMAETTFKKLSVTVSCLCTSNGEKFPGWDTLLRVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFALKDDKELPWLAKYL* 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2493503 2506478 - Vvi6g194 Vvi6g194 787771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g194 979 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 273 975 IPR020793 -
Vvi6g194 979 MobiDBLite consensus disorder prediction 191 287 - -
Vvi6g194 979 SMART BAH_4 316 499 IPR001025 GO:0003682
Vvi6g194 979 MobiDBLite consensus disorder prediction 214 233 - -
Vvi6g194 979 MobiDBLite consensus disorder prediction 234 287 - -
Vvi6g194 979 CDD AAA 604 780 - -
Vvi6g194 979 Gene3D - 579 774 IPR027417 -
Vvi6g194 979 Pfam ATPase family associated with various cellular activities (AAA) 628 773 IPR003959 GO:0005524|GO:0016887
Vvi6g194 979 Gene3D - 775 868 - -
Vvi6g194 979 MobiDBLite consensus disorder prediction 504 527 - -
Vvi6g194 979 ProSiteProfiles BAH domain profile. 371 499 IPR001025 GO:0003682
Vvi6g194 979 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 273 975 - -
Vvi6g194 979 SMART AAA_5 623 777 IPR003593 -
Vvi6g194 979 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 373 IPR013083 -
Vvi6g194 979 SUPERFAMILY FYVE/PHD zinc finger 334 377 IPR011011 -
Vvi6g194 979 SUPERFAMILY ALDH-like 43 95 IPR016161 GO:0016491
Vvi6g194 979 Pfam AAA lid domain 801 836 IPR041083 -
Vvi6g194 979 Pfam PHD-finger 332 372 IPR019787 -
Vvi6g194 979 Gene3D - 297 555 IPR043151 -
Vvi6g194 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 837 IPR027417 -
Vvi6g194 979 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 28 101 IPR016162 GO:0016491
Vvi6g194 979 Pfam BAH domain 406 496 IPR001025 GO:0003682
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14915 PF00004 AAA 3.30E-19 CL0023 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g194 K02603 - vvi:100244935 1494.95