Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g20 ATGGCCTCTTCTTTTCAGTGTTTTTGGGGCCTATTCTTCTCACTTTCCATCTATTTTATTCAAGCCACACCTACATCTAATGTTTACATAGTCTATTTAGGGCTCAACCAGTCCCATGATCCTCTTCTCACTTCAAAACACCATCACCAACTCCTATCTAATGTGTTTGAATGTGAAGAAGCGGCAAAGCAATCCATTCTCTATCACTACAAGCATAGCTTCTCAGGGTTTGCAGCAAAGCTCAATGAAAATCAAGCAAACATATTAGCCAAGATGGAAGGAGTGGTATCAGTGTTTAGGAGCAGGACGATGAAATTGCACACAACCAGAAGCTGGGATTTCATGGGTCTCACTTTGGACGAGAGCAGTGAAGTGACTCCATTGCAGCTAGCCTATGGTGATGACATAGTTGTCGGAGTCCTTGATTCAGGTGTTTGGCCAGAATCTAAGAGTTTCCAGGAAGAGTCTTGCTTGGGGCCTATTCCTTCATGTTGGAAAGGAAAATGTGTTAAAGGTGAAATGTTTGACCCCAAAAGGGACTGCAATCGAAAGTTAATTGGTGCCCAATACTACCACAAGGGGTTTGAAGAAGAATTTGGGCCAGTGAACCCTAGAACCTTCGACTATAAGTCGCCTCGAGATTTTGTTGGTCATGGTACACATACAGCCTCAACAGCAGTTGGGTCCGTAGTTAAAAATGTAAGCTCCTTTGGCTTTGGGCAAGGCACTGCTAGGGGTGGAGCGCCTAGGACTCGGCTAGCAGTGTACAAAGTATGTTGGAACGAAGGCCTAGAAGGAATATGCTCCGAAGCAGATATAATGGCAGGTTTTGATAACGCTTTGCATGATGGAGTTCATGTGATCTCAGCCTCATTTGGTGGAGGACCACCACTGAGGCCATTCTTTAAATCCCAGGCGGGTATCGGTTCCTTTCATGCAATGCAGTTGGGTGTTAGTGTGGTATTCTCAGCAGGTAACGATGGGCCTGCACCGTCTAGTGTTGGAAATGTTGCCCCATGGAGCATCTGTGTAGCTGCTTCAACTATTGATCGATCATTTCCGACCAAGATACTACTGGATAAGACCATTTCTGTCATGGGAGAAGGCTTTGTTACCAAAAAAGTTAAGGGGAAGTTGGCTCCTGCAAGGACCTTTTTTAGGGACGGGAACTGTTCTCCGGAGAATTCGCGAAATAAAACAGCAGAAGGGATGGTAATCCTATGCTTCTCCAACACTCCAAGCGACATTGGTTATGCAGAAGTTGCAGTGGTGAACATTGGTGCCTCCGGGTTGATCTATGCTTTGCCTGTGACTGATCAGATTGCCGAAACTGATATAATCCCCACTGTCCGCATCAACCAAAATCAAGGAACTAAACTCCGTCAATACATTGATAGTGCTCCAAAACCTGTGGTGATATCACCTAGTAAGACGACTATCGGAAAGTCACCGGCACCCACAATTGCACACTTCTCTTCTAGAGGGCCTAACACAGTTTCATCTGATATTCTCAAGCCAGACATAAGTGCTCCAGGAGCTAGTATAATGGCAGCATGGCCTCCTGTTACTCCTCCAGCTCCATCATCAAGTGACAAGCGGTCTGTGAACTGGAATTTTCTGTCCGGGACATCAATGGCGTGCCCTCATGTAACGGGAGTTGTTGCCCTTATCAAATCAGCCCACCCAGACTGGTCTCCTGCAGCCATTAAATCTGCTATCATGACTACCGCTTACAACAGGGATAGCACTCATGACAGTATTCTAGCCGGTGGATCAAGGAAAGTTGCAGATCCCTTTGACATTGGTGCTGGCCACTTAAATCCCTTGAAGGCAATGGATCCAGGGCTAGTTTATGACATGCAGGCAAGTGACTACATTGCCTACCTTTGCGATATTGGATACACCAGAGAACAAATAAAGGCCATTGTTCTTCCTGGAACCCATGTTAGCTGTTCAAAAGAAGACCAATCCATCTCAAACCTAAACTATCCTTCAATCACAGTTTCCAACCTCCAATCCACAGTGACGATCAAGAGGACTGTTCGTAATGTGGGACCCAAAAAAACAGCAGTTTACTTTGTTAGTATTGTGAATCCTTGTGGGGTTAAGGTATCAATCTGGCCAAGGATTCTATTTTTCTCATGCTTTAAGGAAGAACACACCTACTATGTGACTCTGAAACCACAGAAGAAGTCTCAAGGGAGGTATGACTTTGGGGAGATAGTGTGGACAGATGGGTTCCATTATGTGAGGAGTCCACTGGTGGTGTCTGTGAACAATGCTGGGGACTCTGATGATTCTCTATCTTACAGCATTTGA 2319 45.36 MASSFQCFWGLFFSLSIYFIQATPTSNVYIVYLGLNQSHDPLLTSKHHHQLLSNVFECEEAAKQSILYHYKHSFSGFAAKLNENQANILAKMEGVVSVFRSRTMKLHTTRSWDFMGLTLDESSEVTPLQLAYGDDIVVGVLDSGVWPESKSFQEESCLGPIPSCWKGKCVKGEMFDPKRDCNRKLIGAQYYHKGFEEEFGPVNPRTFDYKSPRDFVGHGTHTASTAVGSVVKNVSSFGFGQGTARGGAPRTRLAVYKVCWNEGLEGICSEADIMAGFDNALHDGVHVISASFGGGPPLRPFFKSQAGIGSFHAMQLGVSVVFSAGNDGPAPSSVGNVAPWSICVAASTIDRSFPTKILLDKTISVMGEGFVTKKVKGKLAPARTFFRDGNCSPENSRNKTAEGMVILCFSNTPSDIGYAEVAVVNIGASGLIYALPVTDQIAETDIIPTVRINQNQGTKLRQYIDSAPKPVVISPSKTTIGKSPAPTIAHFSSRGPNTVSSDILKPDISAPGASIMAAWPPVTPPAPSSSDKRSVNWNFLSGTSMACPHVTGVVALIKSAHPDWSPAAIKSAIMTTAYNRDSTHDSILAGGSRKVADPFDIGAGHLNPLKAMDPGLVYDMQASDYIAYLCDIGYTREQIKAIVLPGTHVSCSKEDQSISNLNYPSITVSNLQSTVTIKRTVRNVGPKKTAVYFVSIVNPCGVKVSIWPRILFFSCFKEEHTYYVTLKPQKKSQGRYDFGEIVWTDGFHYVRSPLVVSVNNAGDSDDSLSYSI* 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 344488 349182 - Vvi6g20 Vvi6g20 787597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g20 772 Gene3D - 350 481 - -
Vvi6g20 772 Gene3D Peptidase S8/S53 domain 135 625 IPR036852 GO:0004252|GO:0006508
Vvi6g20 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 107 IPR037045 -
Vvi6g20 772 ProSiteProfiles Serine proteases, subtilase domain profile. 111 612 - -
Vvi6g20 772 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.18 22 754 - -
Vvi6g20 772 PRINTS Subtilisin serine protease family (S8) signature 133 152 IPR015500 -
Vvi6g20 772 PRINTS Subtilisin serine protease family (S8) signature 214 227 IPR015500 -
Vvi6g20 772 PRINTS Subtilisin serine protease family (S8) signature 541 557 IPR015500 -
Vvi6g20 772 CDD Peptidases_S8_3 105 578 IPR034197 -
Vvi6g20 772 CDD PA_subtilisin_like 388 472 - -
Vvi6g20 772 Pfam Fibronectin type-III domain 660 756 IPR041469 -
Vvi6g20 772 Pfam Subtilase family 133 581 IPR000209 GO:0006508|GO:0008236
Vvi6g20 772 SUPERFAMILY Subtilisin-like 106 616 IPR036852 GO:0004252|GO:0006508
Vvi6g20 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 22 754 IPR045051 -
Vvi6g20 772 Pfam Peptidase inhibitor I9 28 107 IPR010259 -
Vvi6g20 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 542 552 IPR023828 -
Vvi6g20 772 Gene3D - 629 759 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g20 - - vvi:100265607 1573.14