Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g207 ATGTGTAGTGGTCCGAAGAAGATGGATCCCAAGACTCCAGCTCCATCCTCGACCCCAGAAACCAACACTTCAACTAAAGATATGAATAAGCCAACCGGAGAGGTTGAAAGTGAAAATTCATTTTCTAGTTTGCTTGAATTTGCAGCAAACAATGATGTTGAGGGCTTCCAGAAATCCATTGCGCTTAATGGATCTGCGATTGATAAGGTTGGTCTGTGGTATGTTCATCGAAAGGTGTCGAAACAGATGGTTCTTGAACACAGAACTCCATTAATGGTGGCGGCTATGTATGGTAGTGTTGATATTGTGAAGCTGATACTTTCTCTATCTGAGGCCGATGTAAATCGGTCCTGTGGCCCAGATAAGAGTACTGCCCTTCACTGTGCTGTGTCTGGTGGAACTGTCAATGCTGTTGATGTTGCCAAATTACTTTTACTGGCTGGTGCTGATCCTAACTCCACTGATGCCCAAGGGCATCGACCTTTTGATGTTATTGATGTCTCTCCAAAGCTTCCAGATTTGAAAGCTACCCTTGAAGAGCTTCTAAAAAATGATGATTTTGTTTATCAGCAGGATTTCCAGATTTCCACTGTGAGTTTGAAATCCAAATACCCAGTTGACCCATCTCTTCCTGACATCAAGAACAGCATTTATGCCACTGATGAGTTCCGAATGTACTCGTTTAAGATCCGGCCTTGCTCCCGAGCATATTCCCATGATTGGACTGAATGTCCTTTTGTACATCCAGGTGAGAATGCTCGGAGAAGGGACCCAAGGAAGTTTCATTATAGTTGTGTGCCATGTCCAGAGTTTCGCAAGGGGGCTTGTAGGCGTGGGGACTTGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCAGCACAGTATAGGACCAGACTCTGCAAGGATGGCACAAGTTGCATGCGTCGGGTCTGTTTCTTTGCCCACACCTCTAAGGAACTCCGTCCCCTCTATATGTCCACAGGATCTGGTGTTGCATCTCCACGATCTGCTGCTAATGCAATGGACATGGCTTCGGCCTTGAGCCTCTTTCCTGGCTCCCCTTCAGCCACATGCTGGTTGAGGAGTTCAATTTCTGCATCTGGAAATCTCTCTGTTCGATCAAAGGCCCTAACCCCTTCAAATCTTGATGAGCTTTTCTCTGCTGAGATGTCATCTCCCCGGTATGCTGATCACGTTGCTGCTTCAACCATGTTCTCCCCATCGCATAAATCAGTGGTTCTAAATCAATTCCAGCACCAGCAGGGCATGTTGATGTCACCTCGAGGCATTGAGCCTCTCTCCCCATTGAGCTCTCGTTTTTCCTCTCTGGCTCATCGTGAGAAGCAGCAGCAACACCTACGCAGCCTCAGCTCACGGGATCTTGGTTCCAATGGTGCTGGAATTGTTAATTCCCCTGCAAATTCTTGGTCCAAATGGGAATCCCCCAATGGGAAAATAGATTGGTCTGTTCAAGGAGAAGAACTGGCTTGGCACCGTAAAACTTTTTCAATTGAGCAAAATAGGGAGGGGCCTGATCTTTCATGGGTTCAATCACTGGTGAAGGAAATTGACTCCATTGATCATGCAGTTTTGGGAGCATGGCTTGAGCAGATGCAACTCGATCAGATCGTTGCTTAA 1647 46.51 MCSGPKKMDPKTPAPSSTPETNTSTKDMNKPTGEVESENSFSSLLEFAANNDVEGFQKSIALNGSAIDKVGLWYVHRKVSKQMVLEHRTPLMVAAMYGSVDIVKLILSLSEADVNRSCGPDKSTALHCAVSGGTVNAVDVAKLLLLAGADPNSTDAQGHRPFDVIDVSPKLPDLKATLEELLKNDDFVYQQDFQISTVSLKSKYPVDPSLPDIKNSIYATDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCMRRVCFFAHTSKELRPLYMSTGSGVASPRSAANAMDMASALSLFPGSPSATCWLRSSISASGNLSVRSKALTPSNLDELFSAEMSSPRYADHVAASTMFSPSHKSVVLNQFQHQQGMLMSPRGIEPLSPLSSRFSSLAHREKQQQHLRSLSSRDLGSNGAGIVNSPANSWSKWESPNGKIDWSVQGEELAWHRKTFSIEQNREGPDLSWVQSLVKEIDSIDHAVLGAWLEQMQLDQIVA* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2605294 2609437 - Vvi6g207 Vvi6g207 787784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g207 548 ProSiteProfiles Ankyrin repeat profile. 121 156 IPR002110 GO:0005515
Vvi6g207 548 SMART ANK_2a 121 153 IPR002110 GO:0005515
Vvi6g207 548 SMART ANK_2a 86 116 IPR002110 GO:0005515
Vvi6g207 548 Pfam Ankyrin repeats (3 copies) 63 155 IPR002110 GO:0005515
Vvi6g207 548 ProSiteProfiles Ankyrin repeat region circular profile. 121 155 - -
Vvi6g207 548 MobiDBLite consensus disorder prediction 14 36 - -
Vvi6g207 548 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Vvi6g207 548 SMART c3hfinal6 297 320 IPR000571 GO:0046872
Vvi6g207 548 SUPERFAMILY Ankyrin repeat 45 164 IPR036770 -
Vvi6g207 548 Pfam CCCH-type zinc finger 267 287 IPR041367 -
Vvi6g207 548 Gene3D - 37 179 IPR036770 -
Vvi6g207 548 MobiDBLite consensus disorder prediction 1 36 - -
Vvi6g207 548 Gene3D - 261 325 - -
Vvi6g207 548 ProSiteProfiles Zinc finger C3H1-type profile. 267 289 IPR000571 GO:0046872
Vvi6g207 548 PANTHER UNKEMPT FAMILY MEMBER 193 362 IPR045234 -
Vvi6g207 548 PANTHER UNKEMPT FAMILY MEMBER 426 546 IPR045234 -
Vvi6g207 548 PANTHER UNKEMPT FAMILY MEMBER 23 187 IPR045234 -
Vvi6g207 548 PANTHER UNKEMPT FAMILY MEMBER 368 427 IPR045234 -
Vvi6g207 548 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE 426 546 - -
Vvi6g207 548 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE 23 187 - -
Vvi6g207 548 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE 193 362 - -
Vvi6g207 548 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE 368 427 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g207 Vvi8g1416 ECH
Vvi6g207 Vvi13g1150 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14917 PF12796 Ank_2 8.30E-11 CL0465 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g207 - - vvi:100263975 712.99