Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g207 | ATGTGTAGTGGTCCGAAGAAGATGGATCCCAAGACTCCAGCTCCATCCTCGACCCCAGAAACCAACACTTCAACTAAAGATATGAATAAGCCAACCGGAGAGGTTGAAAGTGAAAATTCATTTTCTAGTTTGCTTGAATTTGCAGCAAACAATGATGTTGAGGGCTTCCAGAAATCCATTGCGCTTAATGGATCTGCGATTGATAAGGTTGGTCTGTGGTATGTTCATCGAAAGGTGTCGAAACAGATGGTTCTTGAACACAGAACTCCATTAATGGTGGCGGCTATGTATGGTAGTGTTGATATTGTGAAGCTGATACTTTCTCTATCTGAGGCCGATGTAAATCGGTCCTGTGGCCCAGATAAGAGTACTGCCCTTCACTGTGCTGTGTCTGGTGGAACTGTCAATGCTGTTGATGTTGCCAAATTACTTTTACTGGCTGGTGCTGATCCTAACTCCACTGATGCCCAAGGGCATCGACCTTTTGATGTTATTGATGTCTCTCCAAAGCTTCCAGATTTGAAAGCTACCCTTGAAGAGCTTCTAAAAAATGATGATTTTGTTTATCAGCAGGATTTCCAGATTTCCACTGTGAGTTTGAAATCCAAATACCCAGTTGACCCATCTCTTCCTGACATCAAGAACAGCATTTATGCCACTGATGAGTTCCGAATGTACTCGTTTAAGATCCGGCCTTGCTCCCGAGCATATTCCCATGATTGGACTGAATGTCCTTTTGTACATCCAGGTGAGAATGCTCGGAGAAGGGACCCAAGGAAGTTTCATTATAGTTGTGTGCCATGTCCAGAGTTTCGCAAGGGGGCTTGTAGGCGTGGGGACTTGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCAGCACAGTATAGGACCAGACTCTGCAAGGATGGCACAAGTTGCATGCGTCGGGTCTGTTTCTTTGCCCACACCTCTAAGGAACTCCGTCCCCTCTATATGTCCACAGGATCTGGTGTTGCATCTCCACGATCTGCTGCTAATGCAATGGACATGGCTTCGGCCTTGAGCCTCTTTCCTGGCTCCCCTTCAGCCACATGCTGGTTGAGGAGTTCAATTTCTGCATCTGGAAATCTCTCTGTTCGATCAAAGGCCCTAACCCCTTCAAATCTTGATGAGCTTTTCTCTGCTGAGATGTCATCTCCCCGGTATGCTGATCACGTTGCTGCTTCAACCATGTTCTCCCCATCGCATAAATCAGTGGTTCTAAATCAATTCCAGCACCAGCAGGGCATGTTGATGTCACCTCGAGGCATTGAGCCTCTCTCCCCATTGAGCTCTCGTTTTTCCTCTCTGGCTCATCGTGAGAAGCAGCAGCAACACCTACGCAGCCTCAGCTCACGGGATCTTGGTTCCAATGGTGCTGGAATTGTTAATTCCCCTGCAAATTCTTGGTCCAAATGGGAATCCCCCAATGGGAAAATAGATTGGTCTGTTCAAGGAGAAGAACTGGCTTGGCACCGTAAAACTTTTTCAATTGAGCAAAATAGGGAGGGGCCTGATCTTTCATGGGTTCAATCACTGGTGAAGGAAATTGACTCCATTGATCATGCAGTTTTGGGAGCATGGCTTGAGCAGATGCAACTCGATCAGATCGTTGCTTAA | 1647 | 46.51 | MCSGPKKMDPKTPAPSSTPETNTSTKDMNKPTGEVESENSFSSLLEFAANNDVEGFQKSIALNGSAIDKVGLWYVHRKVSKQMVLEHRTPLMVAAMYGSVDIVKLILSLSEADVNRSCGPDKSTALHCAVSGGTVNAVDVAKLLLLAGADPNSTDAQGHRPFDVIDVSPKLPDLKATLEELLKNDDFVYQQDFQISTVSLKSKYPVDPSLPDIKNSIYATDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCMRRVCFFAHTSKELRPLYMSTGSGVASPRSAANAMDMASALSLFPGSPSATCWLRSSISASGNLSVRSKALTPSNLDELFSAEMSSPRYADHVAASTMFSPSHKSVVLNQFQHQQGMLMSPRGIEPLSPLSSRFSSLAHREKQQQHLRSLSSRDLGSNGAGIVNSPANSWSKWESPNGKIDWSVQGEELAWHRKTFSIEQNREGPDLSWVQSLVKEIDSIDHAVLGAWLEQMQLDQIVA* | 549 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2605294 | 2609437 | - | Vvi6g207 | Vvi6g207 | 787784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g207 | 548 | ProSiteProfiles | Ankyrin repeat profile. | 121 | 156 | IPR002110 | GO:0005515 | |
Vvi6g207 | 548 | SMART | ANK_2a | 121 | 153 | IPR002110 | GO:0005515 | |
Vvi6g207 | 548 | SMART | ANK_2a | 86 | 116 | IPR002110 | GO:0005515 | |
Vvi6g207 | 548 | Pfam | Ankyrin repeats (3 copies) | 63 | 155 | IPR002110 | GO:0005515 | |
Vvi6g207 | 548 | ProSiteProfiles | Ankyrin repeat region circular profile. | 121 | 155 | - | - | |
Vvi6g207 | 548 | MobiDBLite | consensus disorder prediction | 14 | 36 | - | - | |
Vvi6g207 | 548 | SMART | c3hfinal6 | 262 | 288 | IPR000571 | GO:0046872 | |
Vvi6g207 | 548 | SMART | c3hfinal6 | 297 | 320 | IPR000571 | GO:0046872 | |
Vvi6g207 | 548 | SUPERFAMILY | Ankyrin repeat | 45 | 164 | IPR036770 | - | |
Vvi6g207 | 548 | Pfam | CCCH-type zinc finger | 267 | 287 | IPR041367 | - | |
Vvi6g207 | 548 | Gene3D | - | 37 | 179 | IPR036770 | - | |
Vvi6g207 | 548 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Vvi6g207 | 548 | Gene3D | - | 261 | 325 | - | - | |
Vvi6g207 | 548 | ProSiteProfiles | Zinc finger C3H1-type profile. | 267 | 289 | IPR000571 | GO:0046872 | |
Vvi6g207 | 548 | PANTHER | UNKEMPT FAMILY MEMBER | 193 | 362 | IPR045234 | - | |
Vvi6g207 | 548 | PANTHER | UNKEMPT FAMILY MEMBER | 426 | 546 | IPR045234 | - | |
Vvi6g207 | 548 | PANTHER | UNKEMPT FAMILY MEMBER | 23 | 187 | IPR045234 | - | |
Vvi6g207 | 548 | PANTHER | UNKEMPT FAMILY MEMBER | 368 | 427 | IPR045234 | - | |
Vvi6g207 | 548 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE | 426 | 546 | - | - | |
Vvi6g207 | 548 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE | 23 | 187 | - | - | |
Vvi6g207 | 548 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE | 193 | 362 | - | - | |
Vvi6g207 | 548 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56-LIKE | 368 | 427 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi6g207 | Vvi8g1416 | ECH | |
Vvi6g207 | Vvi13g1150 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14917 | PF12796 | Ank_2 | 8.30E-11 | CL0465 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g207 | - | - | vvi:100263975 | 712.99 |