Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g216 ATGACAGGGGGGAATACAAACAATTCTCCTTCATCTGAATGTCCAAATGGTGGTTCAGAATCCAATGATGGTCAGTCACATTCTAATGGTGGACTGAATGAGGAAGATGATGATAGTATCAAAGAATCACAAGCTACTGCATCCTCACAATCAAATGGGAACTATGGACAAGAACATCAGAATTTGCAGCATATTGCACCCAATATACAGATAGGAAGTTCTGAATGCCTCACACAGCCTCCACAGCTTGAACTTGTTGGTCACTCAATTGCTTGTGCGTCAAATCCATATCAGGATCCATATTATGGGGGGATGATGACAGCTTATGGACCTCAGCCTTTGGTTCATCCTCATTTACTTGGAATGCATGAAGCTAGAATGCCTTTACCCCTTGAGATGACACAAGATCCTGTTTATGTTAATCCAAAGCAGTACCATGGGATTTTGAGACGAAGACAGTCCCGTGCCAAAGCGGAACTTGAAAAAAAGTTGATAAAAGTCCGAAAGCCATATCTGCACGAATCCAGACACCAGCACGCCCTTAGAAGGGCAAGGAGTAGTGGAGGCCGTTTTGCCAAAAAGAGTGCAGCTGAAGCTTCTAAACACGCTTCTGAAGAAAAGGTCACAGCTTTAGGCTCAGCCCCTTCACCACAATCTGTCAGTTCATCGGGTTCAGAGCGGTTGCCATCTGACTCTACTGAAACCTGGAATTCCTCCAGTAGACAGCAAGAAGCAAGAGGGCCTCAAGCACATGACACCCATGAACCTCCCAAATATAAAAATGGCAGCGGCTACTACCAAAGTCCTGGTGACTCACAGACAACAAATCATTCACACACGAGTGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGA 921 45.82 MTGGNTNNSPSSECPNGGSESNDGQSHSNGGLNEEDDDSIKESQATASSQSNGNYGQEHQNLQHIAPNIQIGSSECLTQPPQLELVGHSIACASNPYQDPYYGGMMTAYGPQPLVHPHLLGMHEARMPLPLEMTQDPVYVNPKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHALRRARSSGGRFAKKSAAEASKHASEEKVTALGSAPSPQSVSSSGSERLPSDSTETWNSSSRQQEARGPQAHDTHEPPKYKNGSGYYQSPGDSQTTNHSHTSERGEEDQQWKSFSADQGSQRPHAFQ* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2680764 2687864 + Vvi6g216 Vvi6g216 787793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g216 306 MobiDBLite consensus disorder prediction 1 57 - -
Vvi6g216 306 MobiDBLite consensus disorder prediction 291 306 - -
Vvi6g216 306 SMART cbf3 133 194 IPR001289 GO:0003700|GO:0006355
Vvi6g216 306 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 137 191 IPR001289 GO:0003700|GO:0006355
Vvi6g216 306 MobiDBLite consensus disorder prediction 170 306 - -
Vvi6g216 306 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 5 289 IPR001289 GO:0003700|GO:0006355
Vvi6g216 306 PRINTS CCAAT-binding transcription factor subunit B signature 137 159 IPR001289 GO:0003700|GO:0006355
Vvi6g216 306 PRINTS CCAAT-binding transcription factor subunit B signature 168 191 IPR001289 GO:0003700|GO:0006355
Vvi6g216 306 MobiDBLite consensus disorder prediction 43 57 - -
Vvi6g216 306 ProSiteProfiles NF-YA/HAP2 family profile. 134 194 IPR001289 GO:0003700|GO:0006355
Vvi6g216 306 MobiDBLite consensus disorder prediction 170 189 - -
Vvi6g216 306 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 5 289 - -
Vvi6g216 306 MobiDBLite consensus disorder prediction 211 246 - -
Vvi6g216 306 MobiDBLite consensus disorder prediction 1 29 - -
Vvi6g216 306 Gene3D - 134 196 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g216 Vvi8g1419 ECH
Vvi6g216 Vvi13g1144 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14918 PF02045 CBFB_NFYA 1.80E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g216 K08064 - vvi:100251945 614.764