Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g216 | ATGACAGGGGGGAATACAAACAATTCTCCTTCATCTGAATGTCCAAATGGTGGTTCAGAATCCAATGATGGTCAGTCACATTCTAATGGTGGACTGAATGAGGAAGATGATGATAGTATCAAAGAATCACAAGCTACTGCATCCTCACAATCAAATGGGAACTATGGACAAGAACATCAGAATTTGCAGCATATTGCACCCAATATACAGATAGGAAGTTCTGAATGCCTCACACAGCCTCCACAGCTTGAACTTGTTGGTCACTCAATTGCTTGTGCGTCAAATCCATATCAGGATCCATATTATGGGGGGATGATGACAGCTTATGGACCTCAGCCTTTGGTTCATCCTCATTTACTTGGAATGCATGAAGCTAGAATGCCTTTACCCCTTGAGATGACACAAGATCCTGTTTATGTTAATCCAAAGCAGTACCATGGGATTTTGAGACGAAGACAGTCCCGTGCCAAAGCGGAACTTGAAAAAAAGTTGATAAAAGTCCGAAAGCCATATCTGCACGAATCCAGACACCAGCACGCCCTTAGAAGGGCAAGGAGTAGTGGAGGCCGTTTTGCCAAAAAGAGTGCAGCTGAAGCTTCTAAACACGCTTCTGAAGAAAAGGTCACAGCTTTAGGCTCAGCCCCTTCACCACAATCTGTCAGTTCATCGGGTTCAGAGCGGTTGCCATCTGACTCTACTGAAACCTGGAATTCCTCCAGTAGACAGCAAGAAGCAAGAGGGCCTCAAGCACATGACACCCATGAACCTCCCAAATATAAAAATGGCAGCGGCTACTACCAAAGTCCTGGTGACTCACAGACAACAAATCATTCACACACGAGTGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGA | 921 | 45.82 | MTGGNTNNSPSSECPNGGSESNDGQSHSNGGLNEEDDDSIKESQATASSQSNGNYGQEHQNLQHIAPNIQIGSSECLTQPPQLELVGHSIACASNPYQDPYYGGMMTAYGPQPLVHPHLLGMHEARMPLPLEMTQDPVYVNPKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHALRRARSSGGRFAKKSAAEASKHASEEKVTALGSAPSPQSVSSSGSERLPSDSTETWNSSSRQQEARGPQAHDTHEPPKYKNGSGYYQSPGDSQTTNHSHTSERGEEDQQWKSFSADQGSQRPHAFQ* | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2680764 | 2687864 | + | Vvi6g216 | Vvi6g216 | 787793 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g216 | 306 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Vvi6g216 | 306 | MobiDBLite | consensus disorder prediction | 291 | 306 | - | - | |
Vvi6g216 | 306 | SMART | cbf3 | 133 | 194 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi6g216 | 306 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 137 | 191 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi6g216 | 306 | MobiDBLite | consensus disorder prediction | 170 | 306 | - | - | |
Vvi6g216 | 306 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 5 | 289 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi6g216 | 306 | PRINTS | CCAAT-binding transcription factor subunit B signature | 137 | 159 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi6g216 | 306 | PRINTS | CCAAT-binding transcription factor subunit B signature | 168 | 191 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi6g216 | 306 | MobiDBLite | consensus disorder prediction | 43 | 57 | - | - | |
Vvi6g216 | 306 | ProSiteProfiles | NF-YA/HAP2 family profile. | 134 | 194 | IPR001289 | GO:0003700|GO:0006355 | |
Vvi6g216 | 306 | MobiDBLite | consensus disorder prediction | 170 | 189 | - | - | |
Vvi6g216 | 306 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 5 | 289 | - | - | |
Vvi6g216 | 306 | MobiDBLite | consensus disorder prediction | 211 | 246 | - | - | |
Vvi6g216 | 306 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Vvi6g216 | 306 | Gene3D | - | 134 | 196 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi6g216 | Vvi8g1419 | ECH | |
Vvi6g216 | Vvi13g1144 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14918 | PF02045 | CBFB_NFYA | 1.80E-25 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g216 | K08064 | - | vvi:100251945 | 614.764 |