Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g240 ATGAGGAACTTTAGACCTGAATCGCATGTAGCACAGCAAAGCCGGCGTGATAAGCTTAGAGTTCAACATCAAAGTTCAACCCCAGCTCACCATTTGGAGGAGTTCCCTAACAGTTTGGAACAATTATCGGTCCATCCAGAACTAAACCCAGATCTTATTCAAGTTCGGAATGTTAGGAACGGCAATGTGCTTTATGATCCTATTGTGCTCTCCTCGGAAATGCTCAATTTTTCATCGAATTCTCATGTGTTTTTGGGTAGCAAGGATGCAATGGTGGGGCAAGATTCGAATGCAGTCTCTCAGGATGCTTCATTCCCCAATTTGTCTCACCCAATTTCATCTAAAGCAGCTGGTGACCCACAAAACTGTGACAATTGGAAAGGCCTTGGTACACAGCAAAGCTGTGATTGGATTGTGAATTATGCTAATGGAACGGTGGCTAGTGAAAGCAATCAAAACCCTATGTATGTCGGGGAAGTCTTGTCAGCCAGCTCTATGAAGGTAAACAACATTTCTGCATCTTCACTCGATTTGAAGCCTAATTACAGTGGATATCAGGATGTGCAGTCATCGATAACCAATCCATCCAGTGAAATTTCTAGTCAAGATAGCCAGAAGCATTATGGTGAAATCCATTTCAATTCTCCTCAACTCTACCGAAACACGCTCCAAGAGGTTGTTACTTCAGCTGCAGTTGGAACCCAGGGGCTAGAAATGGCATCCTTTGCGCATCAGAACATTAGGGACACTGGCCGTGATTCATGGGAAGATGGTGGGAATGAACTTGTTCTTCTTCCAAACTTTGGAAATCAGTCTAGTGCTCTCCGTCTTGATTCTTCTGTTGCTTGGATGACTAGGCCAGTAGAGGGTTGCCATCAGTGGAGTGGTGGTGATTTGGGTGTTCTTGCAAACAAGAGTCTTGGAGACTTGAGTACCATTGCAAGTGATTCTAACGCACAAGGTCTGTCACTTTCCCTTTCATCACATCCTTCATCCAAAATACAGGTAGCTCAGTTTGGGGAGAGATATGAGTCGAAGGATCTACGTTCTGGAACTGCAGCTTTCAGTTGCCCACAAGATTTGAAAGTTATGAGCTCTGGTTATTTATGTTCGGATTCAAAGCCACCTGTTAGTGGTAAAGGGTATGGAAATTCCCTTCACGACATAGTGGGGACTTCTACTTACACTCATAGGAGTGCTGGCCCTCTTGGGCCATTCACTGGGTATGCAACAATTTTAAAGAGTTCAAAATTTTTGAAGCCAGCACAACAGGTCCTGGATGAATTTTGTAAAGCAGCAAGTCCCAAACTGGTGAAAACATGTGAGGTAACTCGGAGGACATCTGGAGATGTTAGTGTTTCAGTTCCTGATGCGGTTAACACATCTGACACTGAGGTTGGAGCTGCCAAGGGTGGCAATTCAGCTGTCTCGTCCTCCACATTTTATGATTCAAATGAAATTAGTGAAGGGGGAGTTAAGAGCAGCTCCTGTGAATCGTATAGGCCTGACTACCAACAAAAGAAGGCAAAGCTCTTGTTTATGCAGGAGGAGGTTTGCAGAAGGTACAAGCAATATCATCAACAGATGCAAATGGTGGTTTCATCCTTTGAAACTGTAGCAGGCCTCAGTGCTGCGACCCCCTACATTGCCCTGGCTCTGAAAACAGTCTCGAGGCACTTTCGGTTCCTGAAGAATGCCATATCAGACCAGCTTAGGCACATAAGGAAAGCCTTGGGGGAGGATTTGTCATCCCCCAGCACTGGTGCCTGCACTAGTGCAGGGGATGCAAGTTCACCAAGGTTAAAGTTCATGAACCAAAGCTTTCCGAAACACAAACCTGGTGGGGCTAACCTGGGTTTCCTTGAACCCCAACAACACGTCTGGAGGCCCCAACGAGGCCTACCAGAAAGGGCGGTGGCTATTCTTAGAGCTTGGCTGTTTGAGCATTTCCTTCACCCGTATCCAACGGACACAGATAAACATATGCTAGCCACTCAAACCGGTCTCTCTCGAAATCAGGTATCAAACTGGTTCATAAATGCCCGAGTTCGGGTATGGAAGCCCATGGTTGAAGAAGTACACATGCTTGAAACCAAAGGTTTAGCAGAAAGGGATCAAAATTCAGGCAAAAAAGATTGGAAGTCCATTGGTGAAGGTATGAATTGGGTGCTGAGCAGTGGAATCAAGAGAAGCGATCAAGAGTGGAGTGCCAAATTCCTGGAAGCATGGACGGGTCATTGA 2241 45.65 MRNFRPESHVAQQSRRDKLRVQHQSSTPAHHLEEFPNSLEQLSVHPELNPDLIQVRNVRNGNVLYDPIVLSSEMLNFSSNSHVFLGSKDAMVGQDSNAVSQDASFPNLSHPISSKAAGDPQNCDNWKGLGTQQSCDWIVNYANGTVASESNQNPMYVGEVLSASSMKVNNISASSLDLKPNYSGYQDVQSSITNPSSEISSQDSQKHYGEIHFNSPQLYRNTLQEVVTSAAVGTQGLEMASFAHQNIRDTGRDSWEDGGNELVLLPNFGNQSSALRLDSSVAWMTRPVEGCHQWSGGDLGVLANKSLGDLSTIASDSNAQGLSLSLSSHPSSKIQVAQFGERYESKDLRSGTAAFSCPQDLKVMSSGYLCSDSKPPVSGKGYGNSLHDIVGTSTYTHRSAGPLGPFTGYATILKSSKFLKPAQQVLDEFCKAASPKLVKTCEVTRRTSGDVSVSVPDAVNTSDTEVGAAKGGNSAVSSSTFYDSNEISEGGVKSSSCESYRPDYQQKKAKLLFMQEEVCRRYKQYHQQMQMVVSSFETVAGLSAATPYIALALKTVSRHFRFLKNAISDQLRHIRKALGEDLSSPSTGACTSAGDASSPRLKFMNQSFPKHKPGGANLGFLEPQQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEVHMLETKGLAERDQNSGKKDWKSIGEGMNWVLSSGIKRSDQEWSAKFLEAWTGH* 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3098091 3107496 + Vvi6g240 Vvi6g240 787817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g240 746 MobiDBLite consensus disorder prediction 1 24 - -
Vvi6g240 746 ProSiteProfiles 'Homeobox' domain profile. 625 688 IPR001356 GO:0003677
Vvi6g240 746 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 710 - -
Vvi6g240 746 MobiDBLite consensus disorder prediction 1 31 - -
Vvi6g240 746 Pfam Homeobox KN domain 645 684 IPR008422 GO:0003677|GO:0006355
Vvi6g240 746 SMART HOX_1 628 692 IPR001356 GO:0003677
Vvi6g240 746 SUPERFAMILY Homeodomain-like 630 694 IPR009057 -
Vvi6g240 746 Pfam Associated with HOX 412 568 IPR006563 -
Vvi6g240 746 Gene3D - 631 693 - -
Vvi6g240 746 CDD homeodomain 628 689 IPR001356 GO:0003677
Vvi6g240 746 SMART prehox3 407 569 IPR006563 -
Vvi6g240 746 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 34 710 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14922 PF07526 POX 9.00E-44 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g240 - - vvi:100255350 1440.63