Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g244 ATGAACCAAGGGACCGACAGTTATGGGGTGACTACCGGGTTCGGTGCGACTTCCCATAGAAGAACCAAACAAGGAAATGCTCTTCAGAAAGAACTGATCAGATTCTTGAACGCTGGAATATTTGGGAAGGGAACAGAGTCATGCCACACATTGCCTCACAGTGCGACAAGAGCAGCAATGCTGGTGAGGATCAATACCCTCCTCCAAGGATACTCAGGCATCAGATTTGAGATCTTGGAAGCCACCGTTAAGCTCCTCAACGCCAACATTAGTCCTTGCTTGCCTCTGCGTGGCACCATCAGTGCCTCTGGTGATCTCGTCCCTCTTTCTTACATTGCCGGTCTCCTCACCGGCAGGCCTAACTCCAGGGCCGTAGGGCCTAACGGAGAGTCCCTCAATGCTGAGGAAGCCTTTCGCCTTGCCGGAATTGATGGAGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCACTCGTTAATGGCACGGCAGTAGGGTCTGGTTTGGCTTCAACAGTTCTCTTTGAGGCTAACATACTTGCTGTTTTATCAGAACCCAAGCAAGATCGGTATGCTCTTAGGACTTCACCCCAGTGGTTGGGTCCTCAGATTGAAGTTATTCGAACATCAACGAAGTCCATAGAACGAGAGATCAATTCGGTGAATGACAACCCATTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGGAACTTCCAGGGTACCCCAATTGGTGTTTCCATGGACAACACCAGATTAGCAATAGCCTCCATTGGGAAGCTCATGTTTGCGCAATTCTCTGAGCTGGTTAACGATTTTTACAACAATGGGTTGCCCTCAAATCTCTCTGGTGGAAGGAATCCAAGTCTGGATTATGGGTTCAAGGGTGCTGAGATAGCAATGGCAGCATATTGTTCTGAGCTCCAATTCCTAGCCAACCCAGTCACCAATCATGTTCAGAGCGCTGAGCAACACAACCAGGATGTGAACTCCTTAGGATTGATCTCTTCGCGAAAAACGGAAGAAGCAATTGACATCTTAAAGCTCATGTCCTCAACCTACCTGGTGGCACTTTGCCAGGCTATTGATTTGAGGCATTTGGAGGAGAACTTGAAGAACACAGTCAAGAACACAGTGAGCCAAGTGGCCAAAAAGGTGCTAACCATTGGGATCAATGGGGAGCTTCACCCGTCTAGATTCTGCGAGAAGGACTTGCTTAAAGTAGTAGACCGCGAGCACGTTTTTGCCTACATCGATGACCCATGCAGTGCAACATACCCCTTGATGCAAAACCTAAGGCAAGTCCTGGTTGATCATGCGCTGATGAACAACGAGGATTTGAGGAATTCAAGTACTTCAATCTTTCTCAAGATTGGGGCATTTGAGGAAGAACTGAAGACCCTTTTGCCTAAAGACGTGTTCTCTGCAATATGTGAGGGGAAGATCATCGATCCGCTGCTCAAATGTCTCAATGATTGGGATGGGACTCCTCTTCCAATTTGCTGA 1506 48.14 MNQGTDSYGVTTGFGATSHRRTKQGNALQKELIRFLNAGIFGKGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEATVKLLNANISPCLPLRGTISASGDLVPLSYIAGLLTGRPNSRAVGPNGESLNAEEAFRLAGIDGGFFELQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEPKQDRYALRTSPQWLGPQIEVIRTSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTYLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTIGINGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQNLRQVLVDHALMNNEDLRNSSTSIFLKIGAFEEELKTLLPKDVFSAICEGKIIDPLLKCLNDWDGTPLPIC* 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3233465 3236962 - Vvi6g244 Vvi6g244 787821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g244 501 PANTHER HISTIDINE AMMONIA-LYASE 1 184 IPR001106 -
Vvi6g244 501 PANTHER HISTIDINE AMMONIA-LYASE 182 475 IPR001106 -
Vvi6g244 501 PANTHER HISTIDINE AMMONIA-LYASE 472 501 IPR001106 -
Vvi6g244 501 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 98 114 IPR022313 GO:0016841
Vvi6g244 501 CDD PAL-HAL 1 365 IPR001106 -
Vvi6g244 501 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 184 - -
Vvi6g244 501 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 182 475 - -
Vvi6g244 501 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 472 501 - -
Vvi6g244 501 Gene3D Fumarase/aspartase (Central domain) 166 501 - -
Vvi6g244 501 SUPERFAMILY L-aspartase-like 2 501 IPR008948 GO:0003824
Vvi6g244 501 Gene3D - 1 162 IPR024083 -
Vvi6g244 501 MobiDBLite consensus disorder prediction 1 22 - -
Vvi6g244 501 Pfam Aromatic amino acid lyase 185 378 IPR001106 -
Vvi6g244 501 Pfam Aromatic amino acid lyase 2 183 IPR001106 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g244 Vvi13g527 ECH
Vvi6g244 Vvi8g553 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g244 K10775 - cit:102619342 786.563