Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g246 ATGAAGCTCCCAGTGGAAGTTGCTCTTGCTTGTCTCATTAGCTTACTTGGGATTCAGCTTAGTCTTTGTGATGTACTTTCTGATACATCCAACATAAATAAATGGACATGCACATGTTCTTCTGCTAATCAGGGCAGCCAGAATTATATTCTTGCAGGGAACTGTTCTACATCATGTGATTGCAGTCCAGCTGGAGGAGGATCAACTGGAGATAGATGGACATGTATCTGTGCTGCTGATGGATTTCCTAAAGTAGCATCAGACAGTGGTCATACCAGCTGCTTTACAGCCTGCAATTGTACTTCTGGATCTCCCAATGAAGATGCACCTGCTCGAAGGAAGCATATTTCCAGTAAAGTTGTTGTGATCATTCTGTTACTATGTGTTGTACTCACAACTTTTGCATTTCTTGCTTCGGTGTTATGTTATGTCTATCGAAAGGAAAAGTGCCCTATCCAACCACCAGTATTCTCATCAGACAAAGAAACAAGTTGCAATAGTGCTACCAACTTAATAAGCCATAAAATTAATTCAGTGCCAGAATCCAGAGTTGATATTGGGTCCCCTATCAATTCTTTAACAGGGTGCTTTCACAAGGCTTCTTCCTTATTTAGGAGCAAAACAGGAACCATACACGAGACAATTGTCCAATTTTCTTACTATGAATTGGAAAATGCTACCAATAAGTTCTCCAATTCTAATTTAATAGGAGTTGGTGGAAGCAGCTATGTTTATTGTGGTCAGCTCAAGGATGGAAAAACTGTGGCAGTTAAGCGACTGAAAACCAAAGGGGGCCCAGATGCTGACCTTGTTTTCCTAACAGAGATTGAACTCTTATCCAGACTTCATCATTGTCATGTGGTGCCTTTGCTTGGCTACTGCTCAGAATCCCAAGGAAAGCATGCTCAGAGATTGTTAGTGTTTGAGTACATGCTCAATGGTAATCTGAGAGATTGTTTGGATGGGGACTCAGGAAAAAACATGGACTGGGCCACTCGTGTTTCGATTGCTCTCGGAGCAGCCAGAGGCTTAGAATATCTTCATGAAGCAGCTGCTCCAAGAATTTTGCATAGAGACGTTAAATCCACAAACATTCTTCTGGATGAGAATTGGAGAGCCAAAATAACTGATCTTGGTATGGCTAAACGCTTGAGAGCTGATGGCCTTCCTAGCTGTTCCAATTCTCCAGCAAGAATGCAGGGCACCTTTGGCTATTTTGCACCGGAATATGCTATTGTGGGGAGAGCCTCCCCTATGTCAGATGTTTTTAGTTTTGGGGTGGTTCTTCTTGAGCTGATCAGTGGGCGGAAACCCATCCACAAATCTACCAACAAAGGAGAAGAAAGCCTTGTCATATGGGCTACCCCTCGGCTACAGGATAGTGGGCGAGTGATGTCAGAGTTACCTGACCCACATTTAAAAGGGAATTTCCCAGAAGAAGAAATGCAGATAATGGCTTTCTTAGCAAAGGAGTGCCTATTGTTGGATCCTGATGCCCGACCAACCATGAGTGAGATTGTTCAAATCCTTTCAACGATTGCACCAGATAAATCTAGGAGGAGAAATATTCCAGTCAATTTTTTTCAGAGGTTGAGCCCTCATAGCATGAAAAGTGAAGCACACATGTTGATACCTGACAAAAAATCTGAGAGTCCTGTTGATGTGGAGCTCAGGCGAGCGGGGACCAATAAATGGACAGATCGTTGTTCATTACCATTGGATATTGACCGCACTCTCTGTATTGGAGACAGTCAGACTAAAGCAGTCAGTGTTTCTGCTGAGTATATAGAGAGATTGATCATCATGACTTCAAATGCTAGGAGTTGGCGTGGTCCAGCTGATGAAACTGTGGACTTAACAGAACCCCGGTTTGAATCCTTCTGCATGGCAAATGGTAGATCACCTTGA 1908 43.03 MKLPVEVALACLISLLGIQLSLCDVLSDTSNINKWTCTCSSANQGSQNYILAGNCSTSCDCSPAGGGSTGDRWTCICAADGFPKVASDSGHTSCFTACNCTSGSPNEDAPARRKHISSKVVVIILLLCVVLTTFAFLASVLCYVYRKEKCPIQPPVFSSDKETSCNSATNLISHKINSVPESRVDIGSPINSLTGCFHKASSLFRSKTGTIHETIVQFSYYELENATNKFSNSNLIGVGGSSYVYCGQLKDGKTVAVKRLKTKGGPDADLVFLTEIELLSRLHHCHVVPLLGYCSESQGKHAQRLLVFEYMLNGNLRDCLDGDSGKNMDWATRVSIALGAARGLEYLHEAAAPRILHRDVKSTNILLDENWRAKITDLGMAKRLRADGLPSCSNSPARMQGTFGYFAPEYAIVGRASPMSDVFSFGVVLLELISGRKPIHKSTNKGEESLVIWATPRLQDSGRVMSELPDPHLKGNFPEEEMQIMAFLAKECLLLDPDARPTMSEIVQILSTIAPDKSRRRNIPVNFFQRLSPHSMKSEAHMLIPDKKSESPVDVELRRAGTNKWTDRCSLPLDIDRTLCIGDSQTKAVSVSAEYIERLIIMTSNARSWRGPADETVDLTEPRFESFCMANGRSP* 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3267312 3275141 + Vvi6g246 Vvi6g246 787823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g246 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Vvi6g246 635 ProSitePatterns Protein kinases ATP-binding region signature. 236 258 IPR017441 GO:0005524
Vvi6g246 635 Pfam Protein kinase domain 232 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g246 635 CDD STKc_IRAK 236 510 - -
Vvi6g246 635 Gene3D Phosphorylase Kinase; domain 1 203 310 - -
Vvi6g246 635 ProSiteProfiles Protein kinase domain profile. 230 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g246 635 PANTHER OS01G0750732 PROTEIN 1 633 - -
Vvi6g246 635 Gene3D Transferase(Phosphotransferase) domain 1 311 529 - -
Vvi6g246 635 SMART serkin_6 230 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g246 635 SUPERFAMILY Protein kinase-like (PK-like) 212 510 IPR011009 -
Vvi6g246 635 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE NCRK ISOFORM X1 1 633 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76697 PF00069 Pkinase 2.80E-43 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g246 - - vvi:100263865 1266.91