Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g250 ATGGCTTATGAGAATTCGAGATCTGTAAAATTTCAAGATGATCTTGAACTAGCAAAATTTCCAGCAACCAATGGGGATGGGAAGATCAAGATGAAGTACAAGATCGATGGAACACAAATACAGGAGGCAAGTTACAAGAAGGCTGGGAAGGAGGTGTCTGGGAAGTCTGGAAGATCATTGAAAGCTAAAGTACTGTCCAGAGTTTTTTCTGAGGACTATGAGAGGGTGAAGCAAAAAATATTGGATCCTCGAGGAAAATCCATTCGCAGATGGAACAAGATTTTCTTAGTAGCATGCTTGATTTCCCTGTTTGTGGACCCTTTATTCTTTTACTTGCCGGATGTTCGGGATAAAGTGTGCATGGACATTGAAATACCCCTGGAAGTTGTGCTTACAATTATCAGATCAATAGCTGATATCTTTTACATGATTCAGATTTTTGTTCGATTTCGTACAGCTTATGTTGCACCTTCCTCCCGAGTATTTGGGCGAGGAGAGCTTGTTATAGATACTTCAAAGATTGCATTAAGGTACCTAGGCAAGGGCTTCTGGATTGACCTCATTGCTGCTCTGCCCCTTCCTCAGGTTCTAATTTGGATAATCATCCCCAATTTAAGGGGCTCCACAATGACAAACACAAAAAATATGCTACGATTCATCCTCATCTGTCAGTACCTCCCCAGACTTTATCTTATATTTCCACTCTCATGTCAGATAGTTAAGGCCACAGGAGTTGTGACAGAAACAGCTTGGGCTGGGGCTGCTTATAACCTGATCCTCTATATGTTGGCAAGCCATGTTTTAGGAGCTTGCTGGTATCTTCTCTCGATTGAGCGACAAGAGGCCTGCTGGAGAACTGTCTGCAATCTTGAGAAGTCATCCTGTCAGGATGGATATTTTGATTGCCACAAGGTTAAGGACCCTGGTAGGGAGGCTTGGTTCAAGTCGAGCAATGTCACAAAACTGTGTGATCCAAATAATACCTTTTATCAGTTCGGCATATATGCTGATTCTGTGATATCAGAGGTTACATCCTCAGCATTCTTCGAGAAATACTTTTACTGCCTGTGGTGGGGCCTGAGGAACCTCAGTTCTTTGGGACAAAATCTTTCCACAAGCACCTATGTTGGAGAAATTATTTTTGCCATCATAATTGCTACTCTTGGATTGGTTCTCTTTGCGTTGCTCATTGGTAATATGCAAACATATCTCCAGTCCACTACTGTTCGATTAGAAGAATGGAGGATCAAGAGAACTGATACAGAGCAATGGATGCACCACAGGCAGCTACCTGCGGAATTGAAGCAGTCTGTTAGGAAATATGATCAATATAAATGGGTGGCCACTCGAGGAGTCGATGAAGAAGCTCTTCTAAAAGGACTTCCTATGGACCTCCGAAGAGACATCAAGCGTCACTTGTGCTTTGATCTAGTTCGACGAGTTCCTTTGTTCGATCAAATGGACGAACGAATGCTAGATGCGATATGCGAGAGGCTTAAACCCGCATTGAGCACTGAAGGCACATTTCTAGTGCGTGAAGGTGATCCTGTGAATGAGATGCTCTTCGTAATCCGAGGCAACCTTGATTCTTACACTACCAATGGTGGTCGAACCGGATTCTTCAATTCATGCCGCATAGGCCCAGGTGACTTCTGTGGTGAGGAGCTGCTTACATGGGCCCTGGAACCTCGTCCAAGCATCATCCTCCCATCATCCACACGCACGGTGAAATCCATTTCTGAAGTAGAGGCCTTTGCTCTTATAGCAGAAGACTTGAAGTTTGTAGCATCGCAATTTCGAAGACTTCATAGCAAACAGCTCAGACACAAGTTCCGGTTCTACTCGCCCCATTGGAGAACATGGGCTGCATGTTTCATACAAGCAGCATGGCGCCGGTTTAAGAGGCGGAAGGAAGCAGCTGAGCTCAAGGCTAGGGAGCACCCTGTGGCTGCTGAGCCCCAACCATCATTTGACCGCTTTGATTGTTGTGAGCTCATTGCAAAAGAGGATGTTAAAATGATTGTTTTATTTATCAATATACATTATAAGATGATAAGAAATTTTTTATATTTCTTTTTAGCATTAACTACTTAA 2094 43.46 MAYENSRSVKFQDDLELAKFPATNGDGKIKMKYKIDGTQIQEASYKKAGKEVSGKSGRSLKAKVLSRVFSEDYERVKQKILDPRGKSIRRWNKIFLVACLISLFVDPLFFYLPDVRDKVCMDIEIPLEVVLTIIRSIADIFYMIQIFVRFRTAYVAPSSRVFGRGELVIDTSKIALRYLGKGFWIDLIAALPLPQVLIWIIIPNLRGSTMTNTKNMLRFILICQYLPRLYLIFPLSCQIVKATGVVTETAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRTVCNLEKSSCQDGYFDCHKVKDPGREAWFKSSNVTKLCDPNNTFYQFGIYADSVISEVTSSAFFEKYFYCLWWGLRNLSSLGQNLSTSTYVGEIIFAIIIATLGLVLFALLIGNMQTYLQSTTVRLEEWRIKRTDTEQWMHHRQLPAELKQSVRKYDQYKWVATRGVDEEALLKGLPMDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFVIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALEPRPSIILPSSTRTVKSISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSPHWRTWAACFIQAAWRRFKRRKEAAELKAREHPVAAEPQPSFDRFDCCELIAKEDVKMIVLFINIHYKMIRNFLYFFLALTT* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3297203 3302018 + Vvi6g250 Vvi6g250 787827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g250 697 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g250 697 PRINTS EAG/ELK/ERG potassium channel family signature 263 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g250 697 PRINTS EAG/ELK/ERG potassium channel family signature 352 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g250 697 PRINTS EAG/ELK/ERG potassium channel family signature 378 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g250 697 PRINTS EAG/ELK/ERG potassium channel family signature 396 405 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g250 697 PRINTS EAG/ELK/ERG potassium channel family signature 446 453 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi6g250 697 Gene3D Helix hairpin bin 410 474 - -
Vvi6g250 697 Gene3D - 91 407 - -
Vvi6g250 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 650 - -
Vvi6g250 697 SUPERFAMILY Voltage-gated potassium channels 82 405 - -
Vvi6g250 697 Pfam Ion transport protein 91 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi6g250 697 SUPERFAMILY cAMP-binding domain-like 413 609 IPR018490 -
Vvi6g250 697 Gene3D Jelly Rolls 481 601 IPR014710 -
Vvi6g250 697 CDD CAP_ED 483 614 IPR000595 -
Vvi6g250 697 SMART cnmp_10 483 614 IPR000595 -
Vvi6g250 697 ProSiteProfiles cAMP/cGMP binding motif profile. 483 568 IPR000595 -
Vvi6g250 697 PANTHER - 3 650 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g250 Vvi8g560 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g250 K05391 - vvi:100241591 1340.87