Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g258 ATGAAGGAGACCGAAAAGAGCTTGGACTCTCAACTGTGGCACGCCTGCGCCGGAGGAATGGTGCAGATGCCGTTAGTGAGCTCCAAGGTGTTTTACTTCCCTCAAGGCCACGCAGAGCACGCCCACACCAACGTCGATTTTGCGGCTGCACCGAGGATTCCAGCACTTGTGCTTTGCAGAGTTGCTGCCGTGAAATTCATGGCAGACCCTGAAACTGACGAAACTGTGATTGCTAAAGATGTTCATGGTGAAATTTGGAAATTTAGGCATATCTATAGGGGGACGCCTCGCCGGCATTTGCTGACAACGGGTTGGAGCACTTTTGTGAATCAGAAGAAGTTGGTTGCAGGGGATTCGATTGTGTTCTTGAGGGCGGAGAATGGCGATCTCTGTGTTGGGATTAGGCGAGCCAAGAGGGGAATTGCGGGCAGTGGTGGTGGTTTGAGGGGAGGTCGTAGGGTGAGGCCCGAATCAGTTGTTGAAGCTGCAACTCTTGCTGCCAATGGACAGCCCTTTGAAGTTGTTTATTATCCACGGGCAAGCACTCCGGAGTTTTGTGTTAAGGCTTCAGGTGTGAGGTCAGCCGTTAGGATCCAGTGGTGCTCTGGGATGAGGTTCAAAATGCCATTTGAAACCGAGGATTCTTCTAGGATAAGCTGGTTCATGGGAACCATTTCCTCTGTTCAGGTTGCCGACCCCATCCGCTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAACCAGATTTGCTACAAAATGTGAAGCGGGTCAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCCATCATCCATCTGTCACCCTTCTCACCACCAAGAAAGAAGTTGCGGATACCACAACACCCAGACTTTCCCTTTGACGGCCAATTTCCAATGTCGTCATTTTCAAGCAACCCCCTCGGGTCCAGCAGCCCCTTGTGTTGTCTACCTGATAACACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATATGGAATATCTTTATCAGATCTCCACCTTAACAACAAACTGCAGTCAGGGCTAAAGAACAATGAAAGTATATCTTGTTTGCTTACAATGGGGAATTCTAGCCAGAATCTGGAAAAATCTGCTAATGAAAAGACACCACAGTTCCTACTCTTTGGTCAGCCAATACTAACCGAGCAACAGATGTCTCGTACCTGCTCCAGTGATGCAGTCTCACAAGTTCTTACTGGCAAAAAAAATTTATCCAATGTTGGATTTTCATGGCACCAGGGTTTTCAGACAACTGAAATTGGCCTGGATACGGGTCACTGCAAGGTATTCATGGAGTCAGAGGATGTGGGACGGTCTCTTGACCTCTCGGTTCTTGGATCTTACGAAGAGCTATACACAAGGCTTGCCAACATGTTTGGAATAGAAAGATCAGAGACATTCAGCCATGTCCTTTACCGAGACGCCACAGGAGCAGTTAAACACACTGGAGATGAACCATTCAGTGATTTTACGAAAAAAGCAAAAAGACTGACAATTCTAATGGATTCTGGCAGCAATAACATTGGAAGGACATGGATTACAGGTATGCGGAATGCCGAAAATGGACTAGATTCTTCAAACAAGACAGGTCCTTTAAGCATATTTGCCTAG 1641 47.84 MKETEKSLDSQLWHACAGGMVQMPLVSSKVFYFPQGHAEHAHTNVDFAAAPRIPALVLCRVAAVKFMADPETDETVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIAGSGGGLRGGRRVRPESVVEAATLAANGQPFEVVYYPRASTPEFCVKASGVRSAVRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPIIHLSPFSPPRKKLRIPQHPDFPFDGQFPMSSFSSNPLGSSSPLCCLPDNTPAGIQGARHAQYGISLSDLHLNNKLQSGLKNNESISCLLTMGNSSQNLEKSANEKTPQFLLFGQPILTEQQMSRTCSSDAVSQVLTGKKNLSNVGFSWHQGFQTTEIGLDTGHCKVFMESEDVGRSLDLSVLGSYEELYTRLANMFGIERSETFSHVLYRDATGAVKHTGDEPFSDFTKKAKRLTILMDSGSNNIGRTWITGMRNAENGLDSSNKTGPLSIFA* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3442997 3447976 + Vvi6g258 Vvi6g258 787835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g258 546 Gene3D - 433 518 - -
Vvi6g258 546 ProSiteProfiles B3 DNA-binding domain profile. 75 138 IPR003340 GO:0003677
Vvi6g258 546 Gene3D - 28 138 IPR015300 -
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 144 351 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 144 351 - -
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 2 74 - -
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 75 143 - -
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 74 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 353 523 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 75 143 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi6g258 546 Gene3D - 200 272 - -
Vvi6g258 546 CDD B3_DNA 56 136 IPR003340 GO:0003677
Vvi6g258 546 PANTHER AUXIN RESPONSE FACTOR 353 523 - -
Vvi6g258 546 Pfam Auxin response factor 162 245 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi6g258 546 SMART B3_2 48 138 IPR003340 GO:0003677
Vvi6g258 546 Pfam B3 DNA binding domain 56 137 IPR003340 GO:0003677
Vvi6g258 546 SUPERFAMILY DNA-binding pseudobarrel domain 68 138 IPR015300 -
Vvi6g258 546 ProSiteProfiles PB1 domain profile. 434 514 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g258 Vvi8g564 ECH
Vvi6g258 Vvi13g519 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14924 PF06507 Auxin_resp 2.30E-33 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g258 - - vvi:100256989 877.856