Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g262 ATGGCGATGGCGATTGCGCAGCAGCATAGGGAGAGTAGTAGCAGTGGTAGCATCAACAAGCATCTTGACTCCGGAAAATATGTGCGGTACACCGCAGAGCAGGTCGAGGCTCTGGAACGAGTCTACTTAGAGTGTCCAAAGCCCAGTTCTCTTCGGCGGCAGCAGCTGATCCGGGAGTGTCCTATTCTCTCTAATATTGAGCCCAAGCAAATCAAAGTCTGGTTTCAGAATCGCAGATGTCGAGAGAAGCAGAGAAAAGAGGCTTCTCGACTCCAGACCGTGAACAGGAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAGCTGGTATGCGAGAATGGGTATATGCGACAACAGCTTCAAACTGCATCAGCTGCAACTACTGATGCTAGCTGTGAATCTGTGGTTACCACTCCTCAGCATTCTCTGAGAGATGCTAATAACCCTGCTGGACTCCTCTCCATTGCAGAGGAGACTTTGGCAGAGTTCCTCTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACATAGTTGCAGTGGAGTGGCAGCTCGAGCATGCGGTCTTGTAAGTTTAGAACCCTCAAAGATTGCAGAGATCCTCAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTCACCATGTTTCCAGCTGGAAATGGAGGAACTGTTGAACTCTTATACACACAGATATATGCCCCAACTACGCTGGCTCCTGCACGGGATTTCTGGACTCTAAGATACACCACCAGTTTGGACAATGGCAGTCTCGTGGTCTGTGAGAGATCACTGTCTGGTTCTGGAGCTGGTCCAAACACCGCTGCTGCTGCTCAGTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTTATTCGTCCATGTGAGGGTGGAGGATCGATCATCCATATTGTTGACCACCTGAATCTTGAGGCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCTTCAAGAGTTGTAGCTCAGAAAATGACTATTGCAGCATTGCGCTACATCCGGCAAATAGCTCAGGAGACAAGTGGTGAGGTGGTATATGGTTTGGGCAGGCAGCCAGCTGTTCTGCGAACTTTTAGCCAAAGATTGAGCAGAGGCTTCAATGATGCTATCAACGGATTTAATGATGACGGCTGGTCATTGATGAGTTGTGATGGTGCTGAAGATGTAATAATTGCAGTTAACTCAACCAAAAATTTGAACACCACTTCTAATCCTGCTAATTCCCTTTCCTTGCCTGGGGGGGTTCTCTGTGCTAAAGCATCCATGCTGCTCCAAAATGTTCCTCCGGCAGTTCTGGTTCGCTTCCTGAGGGAGCACCGGTCAGAGTGGGCTGATTTTAGTGTTGATGCCTATTCTGCTGCATCATTGAAAGCTAGCCCATACTCTTATCCAGGGATGAGGCCCACGAGGTTTACTGGGAGCCAAATTATTATGCCACTTGGTCACACAATTGAACATGAAGAGTTGCTTGAAGTAATTCGACTTGAAGGCCATTCTCTTGCTCATGAAGATGCTTTTATGTCGAGGGACATTCATCTCCTGCAGATATGTAGTGGAGTTGACGAGAATGCAGTGGGAGCTTGTTCTGAACTTGTTTTTGCTCCAATTGATGAAATGTTTCCAGATGATGCTCCACTGTTACCCTCTGGTTTTCGGATCATCCCACTGGATTCAAAATCAGGTGATACACAGGAGACATTGACTACTCATCGGACCTTGGATCTGACATCCAGTCTTGAAGTGGGCCCAGCAACAAATCAGGCTGCAGGGGATTCATCATCATGCTATAACACACGATCAGTCTTGACTATTGCCTTCCAGTTTCCATTTGAGAGCAATCTACAGGATAATGTTGCAACAATGGCTCGTCAGTATGTTCGGAGCGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCCATATCTCCTTCAGGATTGGGCCCAGCTGTGGGACCAAAGCTGTCAGCAGGGTCTCCAGAAGCTCTTACATTAGCCCACTGGATCTGCCAGAGCTATAGTTACCATGTTGGGGCGGAGTTGCTGAGATCTGATTCTGTGGGTGGCGATTCGGTGTTAAAAAATTTGTGGCATCACCAGGATGCTATTTTGTGCTGCTCATTAAAGTCATTGCCAGTTTTGATCTTTGCAAACCAGGCAGGACTTGACATGCTGGAGACAACTTTAGTAGCTCTACAAGACATCTCATTGGATAAGATATTTGATGAGTCTGGACGCAAGGGATTGTGTGCAGATTTCGCCAAGATAATGCAACAGGGTTTTGCTTACTTGCCGGCTGGAATCTGCATGTCAACAATGGGGCGCCATGTTTCATATGAACAGGCCATCGCATGGAAAGTCCTTGCTGCGGAAGAGAACACTGTCCATTGCCTTGCTTTCTCTTTCATCAACTGGTCTTTTGTGTGA 2535 47.89 MAMAIAQQHRESSSSGSINKHLDSGKYVRYTAEQVEALERVYLECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLQTASAATTDASCESVVTTPQHSLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTVELLYTQIYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNTAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSRVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAINGFNDDGWSLMSCDGAEDVIIAVNSTKNLNTTSNPANSLSLPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFSVDAYSAASLKASPYSYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAHEDAFMSRDIHLLQICSGVDENAVGACSELVFAPIDEMFPDDAPLLPSGFRIIPLDSKSGDTQETLTTHRTLDLTSSLEVGPATNQAAGDSSSCYNTRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAISPSGLGPAVGPKLSAGSPEALTLAHWICQSYSYHVGAELLRSDSVGGDSVLKNLWHHQDAILCCSLKSLPVLIFANQAGLDMLETTLVALQDISLDKIFDESGRKGLCADFAKIMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLAAEENTVHCLAFSFINWSFV* 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3507792 3517339 - Vvi6g262 Vvi6g262 787839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g262 844 CDD homeodomain 26 86 IPR001356 GO:0003677
Vvi6g262 844 SMART HOX_1 23 89 IPR001356 GO:0003677
Vvi6g262 844 MobiDBLite consensus disorder prediction 1 20 - -
Vvi6g262 844 SUPERFAMILY Bet v1-like 164 376 - -
Vvi6g262 844 Pfam MEKHLA domain 700 843 IPR013978 -
Vvi6g262 844 Coils Coil 95 122 - -
Vvi6g262 844 CDD bZIP 78 117 - -
Vvi6g262 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 2 844 IPR044830 GO:0003700
Vvi6g262 844 CDD START_ArGLABRA2_like 159 375 - -
Vvi6g262 844 SUPERFAMILY Homeodomain-like 24 88 IPR009057 -
Vvi6g262 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 2 844 - -
Vvi6g262 844 Pfam Homeodomain 26 84 IPR001356 GO:0003677
Vvi6g262 844 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Vvi6g262 844 SUPERFAMILY Bet v1-like 412 608 - -
Vvi6g262 844 Gene3D - 199 381 IPR023393 -
Vvi6g262 844 Gene3D - 19 92 - -
Vvi6g262 844 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
Vvi6g262 844 Pfam START domain 165 372 IPR002913 GO:0008289
Vvi6g262 844 SMART START_1 164 374 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g262 Vvi13g514 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14925 PF01852 START 3.50E-47 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g262 K09338 - vvi:100243208 1678.3