Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g267 ATGATCTTCATCCTAGTCTACTGCACCGCCGGCATCTCCGGAGGACACATAAACCCGGCGGTGACCTTTGGGCTGTTCTTGGCGAGGAAGGTGTCGCTGGTGAGGGCTCTCATGTACATGATAGCTCAGTGCCTGGGTGCAGTCTGCGGTGTGGGCTTGGTGAAGGCGTTTCAGTCTTCGCTCTACAATAGGTACGGTGGGGGAGCAAACGAGCTGGCTGGTGGCTACAACAAGGGCGTGGGATTGGGTGCTGAGATCATCGGCACCTTTGTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAAGAGGAACGCCCGAGACTCCCATGTTCCTGTTTTGGCACCACTGCCCATCGGATTTGCGGTGTTCATGGTTCACCTGGCAACAATTCCCATCACCGGCACCGGTATCAACCCGGCTAGAAGCTTCGGAGCTGCTGTCATCTATAACAACGACAAGGCCTGGGATGACCATTGGATGTTCTGGGTCGGACCATTCATTGGAGCTGCCATTGCTGCATTCTACCACCAGTATATTCTGAGAGCAGCGGCCATTAAAGCTCTAGGATCTTTCAGGAGCAATGCCTAG 591 54.65 MIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALMYMIAQCLGAVCGVGLVKAFQSSLYNRYGGGANELAGGYNKGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWMFWVGPFIGAAIAAFYHQYILRAAAIKALGSFRSNA* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3578645 3580306 + Vvi6g267 Vvi6g267 787844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g267 196 TIGRFAM MIP: MIP family channel proteins 2 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g267 196 CDD MIP 1 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g267 196 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g267 196 PRINTS Major intrinsic protein family signature 84 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g267 196 PRINTS Major intrinsic protein family signature 120 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g267 196 PRINTS Major intrinsic protein family signature 160 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g267 196 Pfam Major intrinsic protein 1 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi6g267 196 SUPERFAMILY Aquaporin-like 2 181 IPR023271 -
Vvi6g267 196 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 2,4-RELATED 1 196 - -
Vvi6g267 196 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 196 IPR034294 -
Vvi6g267 196 ProSitePatterns MIP family signature. 16 24 IPR022357 -
Vvi6g267 196 Gene3D Glycerol uptake facilitator protein. 1 196 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g267 Vvi8g570 ECH
Vvi6g267 Vvi13g510 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g267 K09872 - vvi:100233093 398.667