Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g278 ATGAGGTGGCAAGAAAGCCAAGGCTCTCTTCTTTCTGGGTTTCCAAACGGATCGCAACTGCTAACCCCACCATCCGCACAATCCATTCCCAAGAGTAAAGAAATGGGAAACACGGGAAGCAGTCGCCGGCGACACCAGCGGAGCCACCGCAACCACCCAGCTCTGCCGCCTCAGCTATCACCCCAACCTGAAATTACTGCAAACAGATACGTTTTTGCCGCTGCCACAGCTTACACATCAGCGTACCCTAACCCTAATCAACCTTACTACTATAATTACAATGGTCACTACCCTCCTGTGCCGGTACCGTTATCGGGTTCGTACACCCGCCTTCATCGCGCTGGCGGTGCAATCCCAAATTGGGTTGGTGGGCACCAACCTTGCGGGGTGGCTCCGCCCCCACCTGCCCCTTATGTTGAGCATCAGAAGGCAATTACTATCCGAAACGATGTGAATATTAAAAAAGAAACATTGAGAGTTGAACCAGATGAAGAGAATCCGGGGAAGTTTCTGGTTGCTTTCACTTTTGATGCTACTGCAGCTGGAAGCATCACAGTTGTATTTTTTGGCAAAGAAGGCATTAGCGGTGACCTGATTACAGTGAAGGAAGGCGTGATTGAACCTGTGACGGTGTCTTTCCAGCAAGGTCTTGATCAGAAGTTCAAACAACCTTCTGGAACTGGGATTGACTTCTCAATGTTTGAGGAAACAGAGTTAATGCAGGAGAGTGATATCAAAGTTTGTCCTCTCCTGGTGAAGGCTGGGGCATACCCATTGGACCATAGCCAATCAGAAGGAAATCTGACTGGGAATTCTCAGATCACCCAGGCTGTGTTTGAGAAGGAGAAAGGTGTACAACAAGTGCGGGTTGTGAAACAGATACTGTGGGCAGAGGGGATGAGATATGAGCTGCAGGAGATTTTTGGGATTGGGAATTCTGTTGATGACAATGCTGATGGTACTGATTCTGGGAAAGAGTGTGTCATCTGCTTGTCAGAACCAAGAGACACAACTGTCCTCCCTTGCAGACACATGTGTATGTGTGGTGGGTGTGCCAAGGTTTTGAGGTTCCAGATGAACCGATGCCCTATTTGCCGACAACCAGTTGAGCAGCTCCTAGAGATCAAGGTAAACAACAAATCTGACGTGTGA 1152 48.78 MRWQESQGSLLSGFPNGSQLLTPPSAQSIPKSKEMGNTGSSRRRHQRSHRNHPALPPQLSPQPEITANRYVFAAATAYTSAYPNPNQPYYYNYNGHYPPVPVPLSGSYTRLHRAGGAIPNWVGGHQPCGVAPPPPAPYVEHQKAITIRNDVNIKKETLRVEPDEENPGKFLVAFTFDATAAGSITVVFFGKEGISGDLITVKEGVIEPVTVSFQQGLDQKFKQPSGTGIDFSMFEETELMQESDIKVCPLLVKAGAYPLDHSQSEGNLTGNSQITQAVFEKEKGVQQVRVVKQILWAEGMRYELQEIFGIGNSVDDNADGTDSGKECVICLSEPRDTTVLPCRHMCMCGGCAKVLRFQMNRCPICRQPVEQLLEIKVNNKSDV* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3700331 3704868 - Vvi6g278 Vvi6g278 787855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g278 383 Pfam Zinc finger, C3HC4 type (RING finger) 325 371 - -
Vvi6g278 383 SUPERFAMILY RING/U-box 326 372 - -
Vvi6g278 383 MobiDBLite consensus disorder prediction 1 36 - -
Vvi6g278 383 PANTHER - 35 382 - -
Vvi6g278 383 MobiDBLite consensus disorder prediction 1 63 - -
Vvi6g278 383 SMART ring_2 327 365 IPR001841 -
Vvi6g278 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 376 IPR013083 -
Vvi6g278 383 PANTHER MAHOGUNIN 35 382 IPR045194 GO:0061630
Vvi6g278 383 ProSiteProfiles Zinc finger RING-type profile. 327 366 IPR001841 -
Vvi6g278 383 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 326 366 IPR045195 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g278 Vvi8g576 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g278 - - vvi:100250186 669.463