Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g287 ATGGCTGAAGATGGGCTCACACTTCCCTCTTCCATCAGAGGTTTTGTTCAAGAACCAAATTCAAACCCTAACCCTAACCCTAGTGCAAATCCAGTGAAGAAGAAGAGAAATTTACCAGGAACGCCAGATCCAGAAGCAGAAGTCATCGCTCTATCACCAAAATCACTCATGGCCACGAACCGATTCATCTGTGAAATCTGTAACAAGGGTTTCCAGAGAGACCAGAACTTGCAGCTTCACAGGCGAGGCCACAATCTTCCATGGAAGCTCCGGCAAAGAACAAGCAAGGAGGTCCGGAAGAAGGTGTACATATGCCCGGAAAAGTCCTGTGTGCACCACAATCCAACCAGGGCCCTAGGAGACCTCACCGGAATAAAGAAGCATTACAGTAGAAAACACGGTGAGAAGAAGTGGAAGTGCGAGAAATGTTCCAAGAAATATGCAGTTCAGTCAGATTGGAAAGCTCATAGTAAAATTTGTGGCACCAGAGAGTACAAATGCGACTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATCACCCACAGGGCCTTCTGTGATGCTTTAGCTGAGGAAAGTGCCAGGCTCACTTCAGTTTCAGCACCGAATCCAATCTTCAGAAATGAGTTGATGAATGGGAGCATTAGCAACCCACAAGCCCACATAATCCCCCAATTTTCCTCACCAAGGTTGCCACTGTGGCTGGACCATGCCAATTCCCACCTCAACAACCCCATTGGGGTTAACACTAATGGTTCCTTTTTGGCACCGACATCCGCTGGGTTGCCTGAAATGGTGCAAACAGCGCCCATGAGTATGTATGGATCACCGGCATCATCACAGAATCAGTGGCTCCAAAGGTGTTCAGAAGCGTCATTTACTTCATCCACATTGCCACGGGTGTTAAAGGAGGAGGAAGAGAACAAAGGAAATTTGTCTGAGAGCATAACTTCCTTGTTCTCAAGTAATCAGAATCAACAAGAAAGCTCGGCTCACATGTCAGCAACCGCACTCTTGCAGAAAGCTGCCCAAATGGGGTCTACAAAGAGCAACTCAGCCTTCTTCAGTACTACAGGATTCGGTTCCATCAACTCATCCCTCTCCAATACTACGCCCTTCAGCTCTTATCCCCATGGCAGAAGCAACAACCAAGTCCACAAGTTTCTTATCAGGCAGTCAAACCAATCCGACAGCATGAACCAACTCATCAACTCAACATCACCCTCCTCCACCATGGGAGATGGACTGCTGATGGGTGATATGAACTCAACCCCATTATTCCATGCAAGTTCCAATGAAGTTGAACGCGGTCTAACCAGAGATTTTCTGGGTGTGGGAAGTGATGCAAGCAGACCCTTCTTGCAACAAGAGCTGGCTAAGTTTGCTTCAATGGGTTCAGCCATGGGCATGAGCCAATACAGTGGAAACCACTGA 1434 47.7 MAEDGLTLPSSIRGFVQEPNSNPNPNPSANPVKKKRNLPGTPDPEAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYICPEKSCVHHNPTRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVSAPNPIFRNELMNGSISNPQAHIIPQFSSPRLPLWLDHANSHLNNPIGVNTNGSFLAPTSAGLPEMVQTAPMSMYGSPASSQNQWLQRCSEASFTSSTLPRVLKEEEENKGNLSESITSLFSSNQNQQESSAHMSATALLQKAAQMGSTKSNSAFFSTTGFGSINSSLSNTTPFSSYPHGRSNNQVHKFLIRQSNQSDSMNQLINSTSPSSTMGDGLLMGDMNSTPLFHASSNEVERGLTRDFLGVGSDASRPFLQQELAKFASMGSAMGMSQYSGNH* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3815581 3818314 - Vvi6g287 Vvi6g287 787864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g287 477 MobiDBLite consensus disorder prediction 13 31 - -
Vvi6g287 477 Gene3D Classic Zinc Finger 116 195 - -
Vvi6g287 477 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Vvi6g287 477 Gene3D Classic Zinc Finger 40 114 - -
Vvi6g287 477 SMART c2h2final6 138 158 IPR013087 -
Vvi6g287 477 SMART c2h2final6 62 84 IPR013087 -
Vvi6g287 477 SMART c2h2final6 103 133 IPR013087 -
Vvi6g287 477 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
Vvi6g287 477 PANTHER ZINC FINGER PROTEIN JACKDAW 7 466 IPR033243 GO:0003700
Vvi6g287 477 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Vvi6g287 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Vvi6g287 477 MobiDBLite consensus disorder prediction 1 44 - -
Vvi6g287 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 466 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g287 Vvi8g588 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14927 PF12171 zf-C2H2_jaz 6.90E-05 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g287 K25870 - vvi:100248459 924.08