Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g289 ATGAGCGTGATCGACATTATTTTCCGAGTTGATCAAATATGCAAGAAATTCGACAAGTACGATGTCGACAAGCAGCGCGATCTCAATGCCTATGGTGACGATGCCTTTGCTCGCCTCTACGCCAGCGTCGAAGCTAACATTGAATCGGCTCTTCATAAATCTGAAATTTCTCTGATAGAGACGAATAGGGCTGCTGCCGTTGCACTGAATGCTGAGATTCGTCGAACCAAGGCTCGGTTGCTAGAGGAAGTTGTCAAGCTGCAGAAATTGGTGCTCAAAAAGGTTAAAGGGCTCACAAAAGAAGAACTAAGTATCCGTAATGATTTGGTCCTGGCTCTACCAGAAAGAATTCGAGCAATACCAGATGGGAGCATGGCAGGAGCCAAACAAACTGCAAATTGGGCAGCTTCGGCATCTCATAAAAACATCATGTTTGACTCATCAGATGGAAATTTTGACAGCGAGTTTTTCCAACAAAGTGAAGAATCAAGTCAGTTTAGACAAGAATATGAAATGAGGAGAATGAAACAGGCAAGTCTAGATGTTATATCAGAAGGGTTAGACACACTGAAGAATTTGGCCAATGATATGAATGAGGAATTAGATCGGCAAGTTCCACTGATTGATGAAATTGATACAAAGGTAGACAAGGCAACATCTGACATTAAGAATACTAATGTTAGACTCAAGGAAACCGTTACCAAGATGAGGTCCAGTCAAAACTTCTGTATTGACATAATTCTTCTGTGCGTAATTCTGGGAATCGCTTCCTATTTATACAATGTATTGAAATGA 795 41.13 MSVIDIIFRVDQICKKFDKYDVDKQRDLNAYGDDAFARLYASVEANIESALHKSEISLIETNRAAAVALNAEIRRTKARLLEEVVKLQKLVLKKVKGLTKEELSIRNDLVLALPERIRAIPDGSMAGAKQTANWAASASHKNIMFDSSDGNFDSEFFQQSEESSQFRQEYEMRRMKQASLDVISEGLDTLKNLANDMNEELDRQVPLIDEIDTKVDKATSDIKNTNVRLKETVTKMRSSQNFCIDIILLCVILGIASYLYNVLK* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3830034 3835134 - Vvi6g289 Vvi6g289 787866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g289 264 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi6g289 264 SMART tSNARE_6 165 232 IPR000727 -
Vvi6g289 264 Gene3D - 168 231 - -
Vvi6g289 264 Coils Coil 70 90 - -
Vvi6g289 264 CDD SNARE_Qc 180 231 - -
Vvi6g289 264 Pfam SNARE domain 207 256 IPR000727 -
Vvi6g289 264 PANTHER SYNTAXIN 1 261 IPR045242 -
Vvi6g289 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vvi6g289 264 SUPERFAMILY SNARE fusion complex 176 230 - -
Vvi6g289 264 PANTHER SYNTAXIN-73 1 261 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g289 Vvi8g590 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g289 K08506 - vvi:100258712 462.225