Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g293 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTGGAGAAGCATGCTTTCTGTAATGGGGATTGTGATAAGGCCAGTTGTGTTTGTTGCTTGTCTTCTTCATCTTCTTCTTCTTCTGCGTCTAACTCCTCTGCTTCTCCTGACTCTTCTTCAATCTATTTGGAGCTTTGGCATGTTTGTGCTGGCCGTCTCACCTCCCTCCCCAAGAAAGGGAATGTGGTTGTTTATTTCCCACAAGGTCACTTGGAACAAGCTGCCTCGTCCTCTCCTTTTCCACCCATGGACATTTCTACCTTTGATCTCCCACCCCAGATCTTCTGCAGGGTTGTGAATGTTCAACTTCTCGCTAATAAGGAGAATGATGAGGTCTATACACAGGTCACTTTGCTTCCTCAACCAGAGTTGGCAGGCATAAATTTAGAGGGCAAAGAGCTTGAAGGACTAGGGGTAGATGAGGAGGGGGGTGGAGGATCACCAACAAAATCAACCCCCCACATGTTTTGCAAAACTCTTACAGCTTCGGACACTAGCACCCATGGTGGATTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCACCATTGGACTACAAACAGCAAAGACCCTCTCAAGAGCTTGTGGCTAAGGACCTACATGGAGTTGAGTGGAGATTCCGGCATATTTATAGAGGTCAGCCAAGGCGACATCTGCTTACTACAGGTTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCAGGGGATGCAGTGCTCTTTTTGAGAGGTGAAGGTGGAGAGCTGCGATTGGGAATTAGGAGGGCTGTTCGACCAAGAAATGGTCTTCCTGATTCAATCATTGGTAACCAGAATTCATATCCCAACGTTCTTTCCCTGGCAGCTAATGCAGTAGCCACCAAGAGCATGTTCCACGTTTTTTACAGCCCAAGGGCAAGTCATGCAGAGTTCGTCATTCCCTACCAAAAGTATGTGAAAAGCATCACAAATCCAATATCTATCGGGACAAGATTCAAAATGAGATACGACATGGATGATTCACCAGAAAGAAGGTCTAGTGGTGTAGTAACTGGAATTGGTGACTTGGATCCATATAGATGGCCCAACTCAAAATGGAGATGCTTGATGGTCAGATGGGATGATGATATTGTTAGTGATCCTCAAGAACGAGTTTCTCCATGGGAAATTGATCCTTCTGTTTCTCTCCCACCCTTGAGCATCCAGTCTTCCCCAAGGCTGAAGAAACTGCGGACCAGTCTGCAGGCAACCCCACCCAACAACCCTATCAATGGAGGGGGTGGGTTTTTGGACTTTGAGGAGTCTGTAAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTTTTGTATCACCCCTCTATGGATGTGATAAGGTAAACCGTTCGCTGGATTTTGAGATGCAAAATCCAAGCCTCGCTTCAACTGGAATAGAAAAGGCTAATTTTTGCGAGTTTATGAGGGCTCCGCCCACCACTTACACAGGCTTTTTGGAATCTGATAGATTCCCAAAGGTCTTGCAAGGTCAAGAAATAGGCCCTTTGAGATCCCTGGCTGGAAAATCTGATTTCAATCTTGGTTCTTGGGGGAAACCCAATCTTGGTTGCAACTTATTCAATATGTATCAGAAACCAAAGCCCAATTTCTACCCACTAGCTTCAGAAGGCATCAGAAACATGTATTTTCCTTACAATGACATCTACAAAGGTGGCCAAGATCCCGTAATGCTTTCTTATGCAAGTAATTTCCCAAGAGAAAACGTTCCATTCAATCCATCTTCTATCCGGAGTGGGGTTATCGGCACTGAAGTTAGAAAGCTAAACATACCAAATGAACCGAAGCCTCCGGAAAATATATCTGCTCCTCCCAATTTAGAGACCAATCTGAAACATCAGAAAGATGACACTTTTAGTGGAACTGCAGCTGGCTGTAAACTGTTCGGGTTTTCCTTGACTGGAGAAACTCCTCCAAACTCACAAAATTCTGGTAAGAGGAGTTGTACTAAGGTTCACAAGCAAGGCAACTTAGTGGGACGAGCCATTGATCTCTCAAGACTGAATGGTTATGGTGACCTGTTTAGTGAACTAGAGCGTTTGTTTGGTATGGAAGGCCTTTTACGAGATCCTGACAAAGGTTGGCAGATCTTGTATACTGATAGTGAGAATGACATGATGGTTGTTGGGGATGATCCATGGCATGAATTCTGTAACGTCGTCTCCAAGATTCATATATACACCCAAGAAGAAGTGGAGAAGATGACCATTGGGATTATCAGTGATGATACACAAAGTTGCTTGGAAGAAGCTCCAGTGATACTGGATGTGTCCAAGTCTTCGTCGGTGGGCCAGCCAGATAGTTCTCCAACAGTGATTAGAATCTGA 2397 44.76 MEIDLNHAVTEVEKHAFCNGDCDKASCVCCLSSSSSSSSASNSSASPDSSSIYLELWHVCAGRLTSLPKKGNVVVYFPQGHLEQAASSSPFPPMDISTFDLPPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELAGINLEGKELEGLGVDEEGGGGSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGEGGELRLGIRRAVRPRNGLPDSIIGNQNSYPNVLSLAANAVATKSMFHVFYSPRASHAEFVIPYQKYVKSITNPISIGTRFKMRYDMDDSPERRSSGVVTGIGDLDPYRWPNSKWRCLMVRWDDDIVSDPQERVSPWEIDPSVSLPPLSIQSSPRLKKLRTSLQATPPNNPINGGGGFLDFEESVRSSKVLQGQENVGFVSPLYGCDKVNRSLDFEMQNPSLASTGIEKANFCEFMRAPPTTYTGFLESDRFPKVLQGQEIGPLRSLAGKSDFNLGSWGKPNLGCNLFNMYQKPKPNFYPLASEGIRNMYFPYNDIYKGGQDPVMLSYASNFPRENVPFNPSSIRSGVIGTEVRKLNIPNEPKPPENISAPPNLETNLKHQKDDTFSGTAAGCKLFGFSLTGETPPNSQNSGKRSCTKVHKQGNLVGRAIDLSRLNGYGDLFSELERLFGMEGLLRDPDKGWQILYTDSENDMMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGIISDDTQSCLEEAPVILDVSKSSSVGQPDSSPTVIRI* 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3879686 3888448 + Vvi6g293 Vvi6g293 787870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g293 798 ProSiteProfiles PB1 domain profile. 670 754 IPR000270 GO:0005515
Vvi6g293 798 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 784 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi6g293 798 Gene3D - 165 269 IPR015300 -
Vvi6g293 798 Gene3D - 330 402 - -
Vvi6g293 798 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Vvi6g293 798 SUPERFAMILY DNA-binding pseudobarrel domain 159 276 IPR015300 -
Vvi6g293 798 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Vvi6g293 798 PANTHER AUXIN RESPONSE FACTOR 10 784 - -
Vvi6g293 798 Pfam Auxin response factor 293 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi6g293 798 Gene3D - 666 759 - -
Vvi6g293 798 CDD B3_DNA 165 267 IPR003340 GO:0003677
Vvi6g293 798 Pfam AUX/IAA family 666 754 IPR033389 -
Vvi6g293 798 SUPERFAMILY CAD & PB1 domains 666 749 - -
Vvi6g293 798 SMART B3_2 167 269 IPR003340 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14929 PF02309 AUX_IAA 7.20E-06 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g293 - - vvi:100243320 1567.36