Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g316 ATGGAGTGCAGTGACAGCACGGCCGCCACCAACAACAGCTCTTGCTCATCATCGTCTCCTCGCTCACTCTCGCCATCTTCATCCTCTTCTCCTCCCCCTCCCAACGTCGTCCTTAGCCCTTGTGCCGCTTGCAAGATTCTCCGGCGTCGCTGCGCCGATAAATGTGTGTTAGCGCCCTACTTTCCGCCCACCGACCCCGCCAAATTCACCACCGCTCATCGTGTGTTCGGGGCCAGCAATATCATCAAGTTCTTACAGGAACTTCCCGAATTTCAAAGAGCCGATGCAGTTAGCAGCATGGTTTATGAAGCGCAAGCGAGGATTAGAGACCCGGTTTACGGATGCGCGGGAGCGATTTGTCAGCTTCAAAAACAACTTGACGAGCTCCAAGCACAATTAGCAAAGACGCAAGCCGAGCTAGTGAACATGCAATGCCAACAAGCGAACCTTGTAACTATGATATGCATGGAAATGGAAATGTCTCAGTCCCCTCAACCTTCCTCCGAAGAATCCCTTGATAGCTTAATTAGCCCACAAAGCTATCAGAGTAACTCCTTCTTCCTCGATGACAGCAATATTGGAGCCACATGGGAGCCTCTCTGGACATGA 609 51.56 MECSDSTAATNNSSCSSSSPRSLSPSSSSSPPPPNVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEAQARIRDPVYGCAGAICQLQKQLDELQAQLAKTQAELVNMQCQQANLVTMICMEMEMSQSPQPSSEESLDSLISPQSYQSNSFFLDDSNIGATWEPLWT* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4180822 4182134 - Vvi6g316 Vvi6g316 787893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g316 202 MobiDBLite consensus disorder prediction 1 35 - -
Vvi6g316 202 Coils Coil 119 146 - -
Vvi6g316 202 MobiDBLite consensus disorder prediction 1 25 - -
Vvi6g316 202 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Vvi6g316 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 199 - -
Vvi6g316 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 23 199 - -
Vvi6g316 202 Pfam Lateral organ boundaries (LOB) domain 40 137 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g316 Vvi13g468 ECH
Vvi6g316 Vvi13g462 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14932 PF03195 LOB 2.50E-41 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g316 - - vvi:100251969 353.984