Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g318 ATGGCGTGCAGTGACCCTACATCCGCCCCCAACCCCACCACCACCTCTCCGTCGTCTCCTCACTCACTCTCTCCACCCTCATCCTCTACTCCTCCCCCTCCCACCGTCGTCCTCAGCCCTTGTGCCGCCTGCAAGATTCTCAGGCGGCGCTGCGCCGAAAAATGTGTGTTAGCTCCCTACTTTCCTCCCACCGACCCCGCCAAATTCACCACCGCTCATCGCGTCTTCGGCGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTATCAGCGCGCCGATGCTGTGAGTAGCATGGTTTATGAAGCTCAAGCCAGGATTAGAGACCCAGTCTATGGGTGTACGGGAGCGATCTGTCAGCTGCAAAAACAAGTCAGCGAGCTTCAAGCGCAATTAGCAAAGGCGCAAGCCGAGCTCGTAAACATGCAATGCCAGCAAGCAAACCTTATAGCTATAATTTGTATGGAAATGTCAGGATCTCCTCAACCCTCTTCCTTCCAACAGTCACTTGACAGCTTTATCAGCCCTCCAAGCTATCAAAGCGGCTCCTGCTTCCTTGATGACAACATCACCGGAGCTGCATGGGAGCCTCTCTGGACTTCATCTTTATAA 615 53.82 MACSDPTSAPNPTTTSPSSPHSLSPPSSSTPPPPTVVLSPCAACKILRRRCAEKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEAQARIRDPVYGCTGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLIAIICMEMSGSPQPSSFQQSLDSFISPPSYQSGSCFLDDNITGAAWEPLWTSSL* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4201645 4202347 - Vvi6g318 Vvi6g318 787895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g318 204 Coils Coil 119 146 - -
Vvi6g318 204 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
Vvi6g318 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 22 198 - -
Vvi6g318 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 22 198 - -
Vvi6g318 204 MobiDBLite consensus disorder prediction 1 23 - -
Vvi6g318 204 MobiDBLite consensus disorder prediction 1 34 - -
Vvi6g318 204 Pfam Lateral organ boundaries (LOB) domain 40 137 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g318 Vvi13g467 ECH
Vvi6g318 Vvi13g461 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14933 PF03195 LOB 1.40E-41 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g318 - - vvi:104879565 340.887