Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g328 ATGGAATTTATAGACAACTTGCCGCCTATGGATCTGATGCGCTCCGAGAAGATGACTTTCGTTCAGCTCATCATCCCTGTCGAATCCGCTCACCGAGCCGTCTCATATCTAGGCGAACTTGGTCTTCTCCAATTCCGTGATTTAAATGCTGATAAAAGCCCTTTTCAGCGGACATTTGTTAATCAGGTAAAACGATGTGGAGAGATGGCAAGAAAGCTACGATTTTTCAAAGATCAAGTCAGTAAAGCTGGTTTAATCTCTTCTGCTCGTCCTGATCTGCAACCAGACATTGAGTTGGAGGAACTGGAGATACAACTTTCTGAGCATGAACATGAGCTACTGGAAATGAACTCTAATAGTGAGAAACTACGGCAAACATATAATGAGCTCCTGGAGTTCAAGATGGTATTGCAAAAGGCAAGTGGCTTCCTTGTTTCAAGCAAGAGTCATGCAGTTGTAGAGGAGAGAGAATTAGATGAAACTGCATACTCAAAGGATCGCTATGTAGAGACAGCATCTTTACTTGAACAGGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTGCTACTAGGGGCAATATGCTTTTCAATCAGGCAACAGCTGATGAACATATAATGGATCCTGTATCAACTGAAATGATTGAGAAAACAGTTTTCGTGGTGTTCTTCTCAGGGGAGCAGGCAAAAACAAAGATACTGAAAATTTGTGAAGCATTTGGTGCAAATTGCTATCCTGTGCCTGAAGATATGACCAAACAAAGGCAAATAAGTCGAGAAGTTTTAGCACGCCTCTCTGAATTGGAAGCCACTTTGGATGCTGGTATCCGTCACCGAAACAAAGCACTTTCTTCAATCGGATTCCACCTAATGAAATGGATGAACATGGTAAGAAGGGAGAAAGCAGTATATGATACACTGAACATGCTAAATTTTGATGTTACAAAAAAGTGTCTTGTTGGAGAGGGCTGGTGCCCAATATTTGCAAAAGCTCAGATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTAGAACCAACCGCTTCACAAATGCATTTCAGGAAATTGTTGATGCATATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGTTGGGAGCATTAGTTCTTATAGCTCGTGAAAGTAAGCTTAGTTCTCAGAAACTTGGAAGCTTTATGGAAATGCTGTTCGGTGGGCGCTATGTACTGCTTTTGATGTCCATATTTTCAATTTACTGTGGATTGATTTACAATGAATTCTTCTCTGTACCCTATCACATATTTGGTGGATCTGCTTATAAATGTCGAGATGCTACCTGCAGTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAACTCCCTCAAAATGAAGATGTCTATTTTGTTGGGTGTGACACAGATGAACCTAGGAATTGTGTTAAGTTACTTTAATGCACGTTTCTTTGGAAGCTCATTGGATATAAGGTATCAGTTTGTGCCACAAGTGATATTTCTCAACAGCCTTTTTGGGTATCTATCGCTTCTCATTATCATAAAATGGTGCACTGGTTCTCAAGCTGATCTCTATCATGTGATGATCTACATGTTCTTGAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTTTGGGGCCAGAGACCACTCCAAATCATACTGTTGCTTTTGGCTCTTATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATTTTGAAGAAGCTTCATTCGGAGAGGTTTCAAGGTCGTGCCTATGGGATACTTGGCACATCTGAGATGGATCTTGAAGTGGAACCTGATTCTGCACGACAACATCATGAGGAGTTTAATTTTAGTGAGATTTTTGTGCATCAAATGATACATTCCATTGAATTTGTCCTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGGGTATAATAACTTTGTCATCCGGATGGTGGGGCTAGCAGTTTTTGCCTTTGCTACTGCTTTCATACTACTCATGATGGAGACACTTAGTGCTTTCCTCCATGCCTTGCGTCTCCATTGGGTGGAATTCCAAAATAAGTTTTACCATGGTGATGGCTACAAATTCAGACCTTTCTCCTTTGCTTCATTAATAGATGACGAAGACTAG 2457 41.35 MEFIDNLPPMDLMRSEKMTFVQLIIPVESAHRAVSYLGELGLLQFRDLNADKSPFQRTFVNQVKRCGEMARKLRFFKDQVSKAGLISSARPDLQPDIELEELEIQLSEHEHELLEMNSNSEKLRQTYNELLEFKMVLQKASGFLVSSKSHAVVEERELDETAYSKDRYVETASLLEQEMGPGPSNQSGLRFISGIICKSKALRFERMLFRATRGNMLFNQATADEHIMDPVSTEMIEKTVFVVFFSGEQAKTKILKICEAFGANCYPVPEDMTKQRQISREVLARLSELEATLDAGIRHRNKALSSIGFHLMKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEALQRATFDSNSQVGIIFHVMDAVESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSSQKLGSFMEMLFGGRYVLLLMSIFSIYCGLIYNEFFSVPYHIFGGSAYKCRDATCSNSNTVGLIKYQDTYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIVLSYFNARFFGSSLDIRYQFVPQVIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIILLLLALIAVPWMLFPKPFILKKLHSERFQGRAYGILGTSEMDLEVEPDSARQHHEEFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNNFVIRMVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLIDDED* 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4296026 4318377 + Vvi6g328 Vvi6g328 787905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g328 818 Coils Coil 97 126 - -
Vvi6g328 818 PIRSF ATP6V0A1 8 818 IPR026028 GO:0000220|GO:0046961
Vvi6g328 818 PANTHER VACUOLAR PROTON ATPASES 4 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vvi6g328 818 Pfam V-type ATPase 116kDa subunit family 36 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vvi6g328 818 PANTHER VACUOLAR PROTON ATPASE A1 4 818 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g328 K02154 - vvi:100250193 1581.62