Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g332 ATGGCTGAAGCTCCGACGAGCCCCGGCGGTGGCGGCAGTCACGAGAGCGGCGAGCACAGCCCTCGTTCCAATGTGCGAGAGCAGGATAGGTACCTTCCTATCGCAAATATCAGCAGGATCATGAAGAAGGCTCTTCCGGCCAACGGCAAGATCGCCAAGGATGCGAAGGAGACTCTCCAAGAATGCGTTTCCGAGTTCATCAGTTTCATCACCAGCGAAGCGAGTGACAAGTGCCAGAAGGAGAAGAGGAAGACAATTAATGGTGATGATTTATTATGGGCAATGGCTACGTTAGGGTTTGAAGATTATATTGATCCTCTGAAAGTGTATCTACACAGGTTCAGAGAGGGTGACGCCAAGGGATCTGTGAAGGGTGGAGATGGATCTACTAAAAAAGATTGA 402 50.25 MAEAPTSPGGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETLQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLHRFREGDAKGSVKGGDGSTKKD* 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4346953 4348962 - Vvi6g332 Vvi6g332 787909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g332 133 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 133 - -
Vvi6g332 133 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi6g332 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 133 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi6g332 133 SUPERFAMILY Histone-fold 28 121 IPR009072 GO:0046982
Vvi6g332 133 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vvi6g332 133 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vvi6g332 133 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vvi6g332 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vvi6g332 133 Gene3D Histone, subunit A 17 133 IPR009072 GO:0046982
Vvi6g332 133 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g332 Vvi13g452 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14935 PF00808 CBFD_NFYB_HMF 3.80E-28 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g332 K08065 - vvi:100258807 256.144