Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g332 | ATGGCTGAAGCTCCGACGAGCCCCGGCGGTGGCGGCAGTCACGAGAGCGGCGAGCACAGCCCTCGTTCCAATGTGCGAGAGCAGGATAGGTACCTTCCTATCGCAAATATCAGCAGGATCATGAAGAAGGCTCTTCCGGCCAACGGCAAGATCGCCAAGGATGCGAAGGAGACTCTCCAAGAATGCGTTTCCGAGTTCATCAGTTTCATCACCAGCGAAGCGAGTGACAAGTGCCAGAAGGAGAAGAGGAAGACAATTAATGGTGATGATTTATTATGGGCAATGGCTACGTTAGGGTTTGAAGATTATATTGATCCTCTGAAAGTGTATCTACACAGGTTCAGAGAGGGTGACGCCAAGGGATCTGTGAAGGGTGGAGATGGATCTACTAAAAAAGATTGA | 402 | 50.25 | MAEAPTSPGGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETLQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLHRFREGDAKGSVKGGDGSTKKD* | 134 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4346953 | 4348962 | - | Vvi6g332 | Vvi6g332 | 787909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g332 | 133 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 133 | - | - | |
Vvi6g332 | 133 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 62 | 78 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Vvi6g332 | 133 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 133 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Vvi6g332 | 133 | SUPERFAMILY | Histone-fold | 28 | 121 | IPR009072 | GO:0046982 | |
Vvi6g332 | 133 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Vvi6g332 | 133 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Vvi6g332 | 133 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Vvi6g332 | 133 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 31 | 95 | IPR003958 | - | |
Vvi6g332 | 133 | Gene3D | Histone, subunit A | 17 | 133 | IPR009072 | GO:0046982 | |
Vvi6g332 | 133 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14935 | PF00808 | CBFD_NFYB_HMF | 3.80E-28 | CL0012 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g332 | K08065 | - | vvi:100258807 | 256.144 |