Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g336 ATGCCGATCGGTCGTGGCGCATACGGGATCGTCTGCTCGGTGTTGAATTCGGAGACGAATGAAATGGTAGCAATCAAGAAAATAGCGAACGCCTTCGATAATCACATGGATGCGAAGCGTACGCTTCGGGAGATTAAACTTCTTAGACATTTGGATCACGAAAACGTTATAGGTATAAGAGATGTAGTCCCTCCTCCTTTAAGGAGAGAATTTTCTGATGTCTACATTGCCACGGAACTCATGGACACTGATCTGCACCAAATAATTCGCTCCAACCAAGGTTTATCAGAGGAGCACTGTCAATACTTCTTGTACCAGATACTTCGTGGACTGAAATATATACACTCCGCAAATGTGATTCATAGAGATTTGAAGCCCAGCAACCTCTTGCTGAATGCAAATTGTGATCTAAAAATTTGTGATTTTGGTCTTGCTCGTCCAACTGCAGAGAATGAGTTCATGACGGAATATGTTGTTACGAGATGGTACAGGGCACCTGAACTACTGCTGAATTCTTCAGATTACACTGCTGCAATTGATGTCTGGTCTGTGGGTTGCATTTTTATGGAGCTTATGAACAGAAGGCCTTTATTTGCGGGTAAAGACCATGTGCATCAAATGCGCTTATTGACAGAGCTTCTTGGCACACCCACTGAGTCTGATCTTGGGTTTGTTCGGAATGATGATGCAAGAAGATATATCATGCAACTCCCCCAACATCCCCGCCAGCCATTAGTAAACGTTTTCCCACATATTCATCCACTGGCCATTGATCTCATTGATAGAATGTTGACATTTGATCCGACTAAAAGAATTACTGTTGAAGAAGCATTAGCCCATCCTTACCTTTCAAGATTACATGATACAGCTGATGAACCAGTTTGCCCAGAGCCATTTTCCTTTGAATTTGAGCAACAAGCTCTGGTAGAAGAACAGATGAAGGATATGATTTACCAGGAGGCTTTATTTTTCAATCCAGGTTACGCTTAA 990 42.42 MPIGRGAYGIVCSVLNSETNEMVAIKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVVPPPLRREFSDVYIATELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTAENEFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRRPLFAGKDHVHQMRLLTELLGTPTESDLGFVRNDDARRYIMQLPQHPRQPLVNVFPHIHPLAIDLIDRMLTFDPTKRITVEEALAHPYLSRLHDTADEPVCPEPFSFEFEQQALVEEQMKDMIYQEALFFNPGYA* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4432853 4436338 - Vvi6g336 Vvi6g336 787913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g336 329 ProSitePatterns MAP kinase signature. 32 135 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi6g336 329 Gene3D Phosphorylase Kinase; domain 1 5 320 - -
Vvi6g336 329 Pfam Protein kinase domain 2 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g336 329 SMART serkin_6 1 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g336 329 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 327 - -
Vvi6g336 329 ProSitePatterns Protein kinases ATP-binding region signature. 3 27 IPR017441 GO:0005524
Vvi6g336 329 SUPERFAMILY Protein kinase-like (PK-like) 3 291 IPR011009 -
Vvi6g336 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vvi6g336 329 ProSiteProfiles Protein kinase domain profile. 1 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g336 329 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 327 - -
Vvi6g336 329 Gene3D Transferase(Phosphotransferase) domain 1 81 310 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76700 PF00069 Pkinase 5.70E-74 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g336 K20536 - vvi:100263976 674.085