Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g340 | ATGTTGGATCTCAATCTCAATGTTGGCTCGAGCGATTCGACTCAGCACGGAGACTCGGTGGTAGGGTCGGAGAAGTTTCCGGAAGGTTCTGGAACTCAAATGGACGAGTCGGGGACCTCCAACTCGTCAATCGTGAATGCAGAAGCGTCGAGCAATGGCGGCGGCGACGATGACTCTTGCTCCACACGCGCCGGCGATGCCTTCTCGTTGAATTTCGATATCTTGAAGGTCGGTGATTGCGGTAGTCCGAACGATGTCGTTACGAGGCAGCTGTTCCCGATGAGTGCCGGTGGAGGAGTTGGTGGAGATTCTGTGTTTTTTCAGGGGCAAGTGGCTCAACAGCATCCACAGCCACAGCAACAGCAACAGCCGGTGAAGAAGAGCAGGAGGGGACCCAGGTCCCGAAGCTCTCAGTACAGAGGAGTTACGTTCTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTGTATTTGGGTGGATTTGACACTGCTCATGCTGCAGCTAGAGCCTATGATCGAGCGGCTATTAAGTTTCGGGGAGTTGATGCTGACATTAATTTTAATCTTAGTGATTATGATGAGGATCTGAAACAGATGAAGAATCTGACAAAGGAAGAATTTGTGCACATACTCCGTCGCCAGAGTACTGGTTTCTCCAGGGGGAGCTCAAAATACCGAGGGGTGACACTGCACAAATGTGGCCGGTGGGAAGCTCGAATGGGTCAATTTCTTGGAAAAAAGTATATATATCTTGGGCTCTTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCGGCTATCAAATGTAATGGAAGAGAGGCAGTCACCAACTTTGAGCCTAGTACTTATGAAGGGGAGATGATCCCTGAGGCCAGCAATGAAGGTAGTGATCACAATCTTGATCTGAACTTGGGGATTTCTCCTCCTTTAAGCAATGGCCCAAAGGAAATTGACGGCTTGGGGCATCTCCAATTTCACTCTGGCTCTCATGATGCTCACAATGGAAGGAGATCAATGATGGAGAACCCTAATATAGAAACAGCGGGTGACCCGTCTTTCAAAGGGCTAGCAATGACATCGGAGCACCCTCCTCTGTGGACTGGTGTATATCCCAGCTTCTTTCCTGGCTATGAGGAAAGGGCAACAGAGAGAAGAATTGAAGCAAGTTCTTCACAAGGACTCCCAAACTGGGGGTGGCAAATGCATGGTCAGGTCACTGCTACTCCAATGCCATTGTTCTCTACTGCAGCATCATCAGGATTCTCATCTTCGGCTACCACTGCTCCCTCCGCTGCCATTCTTTCATCTAAACCGCCCAACACAACATCCCACTCTATCTGTTTTGCTTCATCCGCCTCAGCCGTCACCCACCCCTCTCAATACTATTTCCAGATGAAGCCCCCACCACCTTAA | 1437 | 49.76 | MLDLNLNVGSSDSTQHGDSVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGGGDDDSCSTRAGDAFSLNFDILKVGDCGSPNDVVTRQLFPMSAGGGVGGDSVFFQGQVAQQHPQPQQQQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYDEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIPEASNEGSDHNLDLNLGISPPLSNGPKEIDGLGHLQFHSGSHDAHNGRRSMMENPNIETAGDPSFKGLAMTSEHPPLWTGVYPSFFPGYEERATERRIEASSSQGLPNWGWQMHGQVTATPMPLFSTAASSGFSSSATTAPSAAILSSKPPNTTSHSICFASSASAVTHPSQYYFQMKPPPP* | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4494224 | 4498626 | - | Vvi6g340 | Vvi6g340 | 787917 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g340 | 478 | CDD | AP2 | 138 | 196 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vvi6g340 | 478 | SUPERFAMILY | DNA-binding domain | 137 | 195 | IPR016177 | GO:0003677 | |
Vvi6g340 | 478 | MobiDBLite | consensus disorder prediction | 111 | 139 | - | - | |
Vvi6g340 | 478 | MobiDBLite | consensus disorder prediction | 335 | 364 | - | - | |
Vvi6g340 | 478 | Gene3D | AP2/ERF domain | 137 | 196 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | Gene3D | AP2/ERF domain | 229 | 288 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | SMART | rav1_2 | 138 | 200 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | SMART | rav1_2 | 230 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | MobiDBLite | consensus disorder prediction | 111 | 127 | - | - | |
Vvi6g340 | 478 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 452 | - | - | |
Vvi6g340 | 478 | PRINTS | Ethylene responsive element binding protein signature | 231 | 242 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | PRINTS | Ethylene responsive element binding protein signature | 269 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 452 | - | - | |
Vvi6g340 | 478 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Vvi6g340 | 478 | Pfam | AP2 domain | 229 | 279 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | Pfam | AP2 domain | 138 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | SUPERFAMILY | DNA-binding domain | 229 | 288 | IPR016177 | GO:0003677 | |
Vvi6g340 | 478 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Vvi6g340 | 478 | ProSiteProfiles | AP2/ERF domain profile. | 230 | 287 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | CDD | AP2 | 229 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi6g340 | 478 | ProSiteProfiles | AP2/ERF domain profile. | 138 | 194 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14936 | PF00847 | AP2 | 2.80E-09 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g340 | K09284 | - | vvi:100246815 | 891.723 |