Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g340 ATGTTGGATCTCAATCTCAATGTTGGCTCGAGCGATTCGACTCAGCACGGAGACTCGGTGGTAGGGTCGGAGAAGTTTCCGGAAGGTTCTGGAACTCAAATGGACGAGTCGGGGACCTCCAACTCGTCAATCGTGAATGCAGAAGCGTCGAGCAATGGCGGCGGCGACGATGACTCTTGCTCCACACGCGCCGGCGATGCCTTCTCGTTGAATTTCGATATCTTGAAGGTCGGTGATTGCGGTAGTCCGAACGATGTCGTTACGAGGCAGCTGTTCCCGATGAGTGCCGGTGGAGGAGTTGGTGGAGATTCTGTGTTTTTTCAGGGGCAAGTGGCTCAACAGCATCCACAGCCACAGCAACAGCAACAGCCGGTGAAGAAGAGCAGGAGGGGACCCAGGTCCCGAAGCTCTCAGTACAGAGGAGTTACGTTCTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTGTATTTGGGTGGATTTGACACTGCTCATGCTGCAGCTAGAGCCTATGATCGAGCGGCTATTAAGTTTCGGGGAGTTGATGCTGACATTAATTTTAATCTTAGTGATTATGATGAGGATCTGAAACAGATGAAGAATCTGACAAAGGAAGAATTTGTGCACATACTCCGTCGCCAGAGTACTGGTTTCTCCAGGGGGAGCTCAAAATACCGAGGGGTGACACTGCACAAATGTGGCCGGTGGGAAGCTCGAATGGGTCAATTTCTTGGAAAAAAGTATATATATCTTGGGCTCTTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCGGCTATCAAATGTAATGGAAGAGAGGCAGTCACCAACTTTGAGCCTAGTACTTATGAAGGGGAGATGATCCCTGAGGCCAGCAATGAAGGTAGTGATCACAATCTTGATCTGAACTTGGGGATTTCTCCTCCTTTAAGCAATGGCCCAAAGGAAATTGACGGCTTGGGGCATCTCCAATTTCACTCTGGCTCTCATGATGCTCACAATGGAAGGAGATCAATGATGGAGAACCCTAATATAGAAACAGCGGGTGACCCGTCTTTCAAAGGGCTAGCAATGACATCGGAGCACCCTCCTCTGTGGACTGGTGTATATCCCAGCTTCTTTCCTGGCTATGAGGAAAGGGCAACAGAGAGAAGAATTGAAGCAAGTTCTTCACAAGGACTCCCAAACTGGGGGTGGCAAATGCATGGTCAGGTCACTGCTACTCCAATGCCATTGTTCTCTACTGCAGCATCATCAGGATTCTCATCTTCGGCTACCACTGCTCCCTCCGCTGCCATTCTTTCATCTAAACCGCCCAACACAACATCCCACTCTATCTGTTTTGCTTCATCCGCCTCAGCCGTCACCCACCCCTCTCAATACTATTTCCAGATGAAGCCCCCACCACCTTAA 1437 49.76 MLDLNLNVGSSDSTQHGDSVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGGGDDDSCSTRAGDAFSLNFDILKVGDCGSPNDVVTRQLFPMSAGGGVGGDSVFFQGQVAQQHPQPQQQQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYDEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIPEASNEGSDHNLDLNLGISPPLSNGPKEIDGLGHLQFHSGSHDAHNGRRSMMENPNIETAGDPSFKGLAMTSEHPPLWTGVYPSFFPGYEERATERRIEASSSQGLPNWGWQMHGQVTATPMPLFSTAASSGFSSSATTAPSAAILSSKPPNTTSHSICFASSASAVTHPSQYYFQMKPPPP* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4494224 4498626 - Vvi6g340 Vvi6g340 787917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g340 478 CDD AP2 138 196 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 MobiDBLite consensus disorder prediction 1 20 - -
Vvi6g340 478 SUPERFAMILY DNA-binding domain 137 195 IPR016177 GO:0003677
Vvi6g340 478 MobiDBLite consensus disorder prediction 111 139 - -
Vvi6g340 478 MobiDBLite consensus disorder prediction 335 364 - -
Vvi6g340 478 Gene3D AP2/ERF domain 137 196 IPR036955 GO:0003700|GO:0006355
Vvi6g340 478 Gene3D AP2/ERF domain 229 288 IPR036955 GO:0003700|GO:0006355
Vvi6g340 478 SMART rav1_2 138 200 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 SMART rav1_2 230 293 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 MobiDBLite consensus disorder prediction 111 127 - -
Vvi6g340 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 452 - -
Vvi6g340 478 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 PRINTS Ethylene responsive element binding protein signature 269 289 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 452 - -
Vvi6g340 478 MobiDBLite consensus disorder prediction 30 58 - -
Vvi6g340 478 Pfam AP2 domain 229 279 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 Pfam AP2 domain 138 186 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 SUPERFAMILY DNA-binding domain 229 288 IPR016177 GO:0003677
Vvi6g340 478 MobiDBLite consensus disorder prediction 1 59 - -
Vvi6g340 478 ProSiteProfiles AP2/ERF domain profile. 230 287 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 CDD AP2 229 289 IPR001471 GO:0003700|GO:0006355
Vvi6g340 478 ProSiteProfiles AP2/ERF domain profile. 138 194 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g340 Vvi13g447 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14936 PF00847 AP2 2.80E-09 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g340 K09284 - vvi:100246815 891.723