Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g343 ATGGAGAACGAGTCCGCGGCTGTGGAAGTGAAGGGGGTTCCATCCTACGGTGGGAAATACGTCCAGTACAACGTGCTCGGTAACCTCTTCGAGGTCTCGGCTAAGTACGTTCCGCCGATTCAGCCGGTTGGCCGTGGCGCCTATGGAATCGTTTGCTGTGCGACGAATTCCGAGACAAATAAGGAAGTCGCAATCAAGAAGATTGGGAATGCATTTGACAACAGGATTGATGCTAAAAGGACACTCCGGGAGATCAAACTCCTTTGCCATATGGATCATGAAAATATTGTCAAAATTAAGGACATCATAAGGCCACCTGACAAGGAAAAGTTCAATGATGTGTATATTGTTTATGAATTAATGGATACTGATCTACATCAGATAATACGCTCTTCCCAGGCACTAACAGATGATCATTGTCAGTATTTCCTGTATCAATTATTGCGAGGGCTGAAGTATATACACTCTGCCAATGTTTTGCATCGAGATTTGAAACCAAGCAACCTACTACTGAATGCTGACTGTGACCTCAAGATTTGTGACTTTGGACTTGCAAGAACCACCTCAGAGACAGATTTCATGACAGAATATGTTGTTACCCGGTGGTATCGAGCCCCTGAATTGCTACTCAACTGTTCAGAATATACTGCAGCCATTGATATCTGGTCAGTTGGTTGCATTTTGATGGAGATCCTTAGAAGAGAGCCACTTTTTCCTGGTAAAGACTATGTTCAGCAGCTGGTGCTTATAACTGAGCTATTAGGTTCCCCGGAAGATTCAGATCTTGGATTTCTTAGAAGTGATAATGCTAGGAAGTATGTCAAGCAGCTCCCTTGTGTTCCAAAGCAACCTTTCTCAGAGAAGTTTCCTAACATATCTCCAATAGCCATGGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGAGGAGCCCATCTGCCCCTCTCCTTTCATCTTCGATTTTGAACAATCATCCTTAAGTGAAGACGATATAAAGGAACTCATATGGAATGAGTCTCTGAATTTCAACCCTGATGAGATGCTGGAGTGA 1116 43.55 MENESAAVEVKGVPSYGGKYVQYNVLGNLFEVSAKYVPPIQPVGRGAYGIVCCATNSETNKEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHENIVKIKDIIRPPDKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNADCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLVLITELLGSPEDSDLGFLRSDNARKYVKQLPCVPKQPFSEKFPNISPIAMDLVEKMLVFDPSKRITVEEALNHPFLLPLHEINEEPICPSPFIFDFEQSSLSEDDIKELIWNESLNFNPDEMLE* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4580754 4584961 + Vvi6g343 Vvi6g343 787920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g343 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 368 - -
Vvi6g343 371 SUPERFAMILY Protein kinase-like (PK-like) 40 328 IPR011009 -
Vvi6g343 371 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi6g343 371 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Vvi6g343 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 368 - -
Vvi6g343 371 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g343 371 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Vvi6g343 371 CDD STKc_TEY_MAPK 30 366 - -
Vvi6g343 371 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g343 371 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Vvi6g343 371 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g343 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76701 PF00069 Pkinase 6.30E-73 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g343 K04371 - vvi:100251947 757.673