Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g346 ATGGGGTTTGTTCAAGCAAACAATGATGGTGGTGGGGAGGGAGGGTTGGTGAATAGAGAGAACAGTACATGGGATGAGGGAAAAGAAGTTAGGAATGGAATGGTGGGTGAGGGGCAAGGCTTGGGCTCATCTGAGGAAGATGAGCCTGGGAGCAATGAGATAATTGAAGATGCAAATAAGGGGTCGGAAGAAGCAATCCAAGTCCATGATGGGCTGCAGAATTCGCAGCAACAGCCTCAAGGGTCAGCAATAAATTGGGATAGTTTTCTCCCCATTAGATCACTGAAGGTTCTTCTGGTGGAAAATGATGATTCGACACGCCATGTAGTTACTGCTCTGCTTCGGAATTGCAGTTATGAAGTTACTGCTGTTGCAAACGGTCTTCAGGCATGGAAAATCTTGGAAGATTTGACCAATCATATTGATATCGTCCTAACAGAGGTAGTCATGCCCTTTATATCGGGAATTGGTCTTTTATGCAAGATCATGAGCCACAAAACTTTCAAGAATATTCCTGTGATTATGATGTCATCCCATGATTCTATGGGTATAGTCTTTAAGTGTCTGTCCAAGGGTGCAGTTGATTTTTTGGTGAAACCTATTCGAAAGAATGAACTTAAAAACCTTTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGCGAAAGTGGCACACAGACTAAAAAATCTGTGAAGTCAAAAAGCAATGATGAGTCTGAAAACAATACGGGCAGCAGTGATGAGCGTGATAATGGAAGTACTGGCCCAAGCATTCGGGATGGAAGTGACAATGGAAGTGGTACCCAGAGCTCATGGACAAAAAGAGCAGCTGAAGTTGACAGCCCCCAACCATTATCACCATTGGATCAATTGGCTGATGCACCTGATAGCACTTGTCCCCAGGTAATCCATACAAAGCCTGGAACTTTAAGCAACCAGTGGGTGCATGTTATTGAAACAAAAGAATGCCAGGGCAAGGATGAACAACCTGACAATGTTGCAATGGGTAGAGACTTGGAATTAGGAGTAGCTACAAATCCAGCTGTACAACTTGAATATCAACATGAGAAGTTTTCAACCTACCCAACATGCAAGAGGCAGAATAAATTGCCTGAATCAGATAGTAAACCATTTGATAAAGAACACTTGGAACATAACAGTACAAGTGCCAATTGTACTGACCCACAGGTAGAAAGCAGAACTTTTGAGAATCCAAATGGCCTTTCTGATGTGTCACAGATCAAAGACAAGGGAAGCTGTGAAACTACAGAACTGCCACCCCTTGACTTAAGTTTAAAAAGGCTGAGAGGAGCAGGAGATGTTGGGGCCTGTGTGCATGATGATCGCAGTATTTTAAGACATTCAGATCTTTCAGCATTCTCAAAATACAATACTGCTTCTTCTGCTAATCAGCAGAAAAGTGGTACCAACTTATAA 1449 43.0 MGFVQANNDGGGEGGLVNRENSTWDEGKEVRNGMVGEGQGLGSSEEDEPGSNEIIEDANKGSEEAIQVHDGLQNSQQQPQGSAINWDSFLPIRSLKVLLVENDDSTRHVVTALLRNCSYEVTAVANGLQAWKILEDLTNHIDIVLTEVVMPFISGIGLLCKIMSHKTFKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTKKSVKSKSNDESENNTGSSDERDNGSTGPSIRDGSDNGSGTQSSWTKRAAEVDSPQPLSPLDQLADAPDSTCPQVIHTKPGTLSNQWVHVIETKECQGKDEQPDNVAMGRDLELGVATNPAVQLEYQHEKFSTYPTCKRQNKLPESDSKPFDKEHLEHNSTSANCTDPQVESRTFENPNGLSDVSQIKDKGSCETTELPPLDLSLKRLRGAGDVGACVHDDRSILRHSDLSAFSKYNTASSANQQKSGTNL* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4606338 4628863 + Vvi6g346 Vvi6g346 787923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g346 482 MobiDBLite consensus disorder prediction 369 424 - -
Vvi6g346 482 MobiDBLite consensus disorder prediction 373 391 - -
Vvi6g346 482 MobiDBLite consensus disorder prediction 219 234 - -
Vvi6g346 482 SUPERFAMILY CheY-like 93 219 IPR011006 -
Vvi6g346 482 MobiDBLite consensus disorder prediction 250 281 - -
Vvi6g346 482 ProSiteProfiles Response regulatory domain profile. 96 214 IPR001789 GO:0000160
Vvi6g346 482 SMART REC_2 95 210 IPR001789 GO:0000160
Vvi6g346 482 MobiDBLite consensus disorder prediction 235 249 - -
Vvi6g346 482 CDD psREC_PRR 97 200 - -
Vvi6g346 482 MobiDBLite consensus disorder prediction 392 423 - -
Vvi6g346 482 MobiDBLite consensus disorder prediction 219 304 - -
Vvi6g346 482 Gene3D - 94 253 - -
Vvi6g346 482 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 36 478 - -
Vvi6g346 482 MobiDBLite consensus disorder prediction 1 54 - -
Vvi6g346 482 Pfam Response regulator receiver domain 97 208 IPR001789 GO:0000160
Vvi6g346 482 PANTHER TWO-COMPONENT RESPONSE REGULATOR 36 478 IPR045279 GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g346 Vvi13g197 ECH
Vvi6g346 Vvi8g673 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14937 PF00072 Response_reg 6.10E-21 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g346 K12129 - vvi:100246836 961.059