Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g348 ATGGGTTGTTTTCGTTGTGGAAAATCAGATAAAAAGTTGAAGAAAAACAGTAACAGTAGCAGCCACAACAGCAACAACAACAGCAAACCCAATGTTCAAACACAGTCCAGTCCAGATGCATTGAAAGTTAATCCATATTTGGATGTGAAGAAGGAGACGGATGTGGAGAAACAGGACTCTAAGGAAGTTAATCCATCTTTGGATGTGAAGAAGGAGGTCTCTGGGAATGGATTACCTGATAAAAATGGATCACCTGATAAAAATGGATTACCTGATAAAAATCAGGCACGGACATTTACATTTCATCAACTTGCGGTTGCAACTGATAATTTCAGGTCTGATTGTTTCTTGGGCGAGGGAGGTTTTGGCAAAGTTTTTAAGGGATATTTGGATAACCCAAGCCAGGTTGTGGCAATCAAGCAACTTGATCGCAATGGATTGCAAGGGATTAGGGAATTTTTTGTTGAAGTATTGACATTGAGCTCTGTTGATCACCCTAATCTTGTCAAATTAATTGGGTATTGTGCTGAGGGTGATCAAAGACTGCTAGTTTACGAGTACATGCCATTAGGATCTTTGGAAAACCATTTGCATGACCTTCCACCTGGCACGAAACCACTTGATTGGAATTCAAGAATGAAAATAGCTGCTGGTGCAGCCAAAGGCTTAGAGTATTTACATGACAAAATCTTCGGGGTGGTTCTTTTGGAGCTCATTACAGGCAGGAAAGCAATTGATAATTCAAAAGGTGCTAGGGAGCAAAATCTGGTTGCATGGGCACGACCCCTGTTCAAAGACCGGAGGAAATTCTCACAGATGGCTGACCCATTACTCCATGGTCAGTATCCTGTCAGAGGTTTGTACCAAGCTCTTGCCATTGCTGCAATGTGTGTGCAGGAGCAACCTAACATGCGGCCCCTCATAGCTGATGTCGTTACTGCTTTAAACTACCTTGCTTCTCAAACATACAACCCCCAAATCCATCCAGTCCAAAGCCACCAGGGGAGCATTTCTCCCACAACGAGAAAGGGCAGTGATAAGAAGTCATCGCAGGAAATGCACCAGAGGAAGACTGAAGGAGAGAAGTAA 1089 43.07 MGCFRCGKSDKKLKKNSNSSSHNSNNNSKPNVQTQSSPDALKVNPYLDVKKETDVEKQDSKEVNPSLDVKKEVSGNGLPDKNGSPDKNGLPDKNQARTFTFHQLAVATDNFRSDCFLGEGGFGKVFKGYLDNPSQVVAIKQLDRNGLQGIREFFVEVLTLSSVDHPNLVKLIGYCAEGDQRLLVYEYMPLGSLENHLHDLPPGTKPLDWNSRMKIAAGAAKGLEYLHDKIFGVVLLELITGRKAIDNSKGAREQNLVAWARPLFKDRRKFSQMADPLLHGQYPVRGLYQALAIAAMCVQEQPNMRPLIADVVTALNYLASQTYNPQIHPVQSHQGSISPTTRKGSDKKSSQEMHQRKTEGEK* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4635359 4641294 + Vvi6g348 Vvi6g348 787925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g348 362 SUPERFAMILY Protein kinase-like (PK-like) 101 328 IPR011009 -
Vvi6g348 362 Gene3D Transferase(Phosphotransferase) domain 1 188 230 - -
Vvi6g348 362 PANTHER OS07G0668900 PROTEIN 231 355 - -
Vvi6g348 362 MobiDBLite consensus disorder prediction 345 362 - -
Vvi6g348 362 MobiDBLite consensus disorder prediction 45 68 - -
Vvi6g348 362 PANTHER OS07G0668900 PROTEIN 231 355 - -
Vvi6g348 362 MobiDBLite consensus disorder prediction 328 362 - -
Vvi6g348 362 Gene3D Phosphorylase Kinase; domain 1 84 187 - -
Vvi6g348 362 Pfam Protein tyrosine and serine/threonine kinase 116 229 IPR001245 GO:0004672|GO:0006468
Vvi6g348 362 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Vvi6g348 362 MobiDBLite consensus disorder prediction 1 94 - -
Vvi6g348 362 MobiDBLite consensus disorder prediction 18 41 - -
Vvi6g348 362 Gene3D Transferase(Phosphotransferase) domain 1 231 335 - -
Vvi6g348 362 PANTHER OS07G0668900 PROTEIN 41 229 - -
Vvi6g348 362 PANTHER OS07G0668900 PROTEIN 41 229 - -
Vvi6g348 362 ProSiteProfiles Protein kinase domain profile. 111 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g348 362 MobiDBLite consensus disorder prediction 328 344 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g348 Vvi13g199 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76702 PF07714 PK_Tyr_Ser-Thr 2.30E-21 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g348 - - vvi:100262185 445.662