Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi6g351 | ATGGAAGCTTCGGATGATTCAGCGAAGTCGCCTTCACTCATTCCACCATTGCCCAGAGACTCGCGGGGCTCACTCGAAGTGTTCAACCCTTCCACCTACTCTACCAGACCCACCAACCAGGCGTTTCGGCCACAACCCACCTGGAAAAGCTGGGCAGAGCCGCGTCGCTCCGCCGACGAGATCACCTCATGGATGGCACTCAAGGAGCCTTCCCCGGCACCTCCGTTGCCCCTCGCCCAGAAGTCCCGGGCGGCGGAGTGGGGACTGATGCTGAAGACTGACACCGAGACTGGGAAGCCACAGGGGGTCGCAGTGAGGACTTCCGGCGGCGACGAGCCCAACTACAAAACCGGGACCTCCAGGAGGAACTCCGGAAACTCAGTGCGGAGCTCAGGAGAGATGTCGGACGAGGGCGGTGCTGGGAAGGACAGAGCGTTTCCGAGAGTTTCAGAGGACTTGAAGGATGCATTGTCAACCTTCCAACAGACGTTCGTGGTGTCGGATGCAACCAAACCCGATTATCCGATCTTGTACGCGAGTGCCGGTTTCTTCAAGATGACGGGTTACACCTCCAAAGAGGTGATAGGGAGGAACTGTCGGTTTCTACAAGGGTCTGGCACGGACCCAGAAGATGTGGCAAAGATTAGGGAGGCGTTGCATGCGGGAAACAGTTACTGTGGAAGGCTGCTTAATTACAAGAAGGATGGCACTCCCTTTTGGAACCTTCTCACCATTTCCCCCATCAAGGATGAAAATGGAAACGTCCTCAAATTTATTGGAATGCAAGTAGAGGTGAGCAAGCATACAGAGGGGTCCAAAGAAAAGATGACTCGCCCCAATGGGCTGCCAGAATCATTGATTCGTTATGATGCTCGTCAGAAAGATATGGCTACCAATTCAGTATCTGAACTTGTGCAAGCAGTGAAGAAACCCCGGTCACTCAGTGAATCATCAGATCGCCCCTTCATGAGAAAATCAGAAGATGGTGAACAGGAGAGACCAGAAGCTCCTGGAAGGCGAAACTCAGAGAGTGTGGCTCCACCGAGACGGAATTCACAAAGTGGTCGTAGAGCCTCCATGCAAAGAATCAGTGAGTTGCCTGAAAAGAAGCCGAGAAAATCTAGTCGCCTTTCTTTCATGAGGATTATGAGGAAAAGTCAAGCCCACACTGAAGAATTTGATACTGAAGTTCTTGTGGATGACACCTCCGATAGTGAAGATGATGAGAGGCCTGACAGCATTGATAACAAAACAAGACAAAGGGAAATGAGAAGAGGTATTGATCTGGCCACCACGCTTGAACGTATAGAGAAGAACTTTGTCATCACTGATCCCAGACTGCCTGATAATCCCATTATATTCGCATCTGATAGCTTCTTGGAACTAACAGAATACAGTCGTGAAGAAATTTTGGGAAGAAATTGCAGGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACAAAAAGCGGGAAGAAGTTCTGGAACCTGTTCCATCTGCAGCCTATGCGTGATCAGAAGGGAGAAGTACAATATTTTATTGGGGTACAACTAGATGGAAGTGAACATGTGGAACCTCTTCACAACTGTATTCCAGAATCCACTGCAAAAGAGAGTGCAAAACTGGTGAAAGAAACTGCAGAAAATATTGATGATGCTGTGAGAGAACTTCCAGATGCCAATTTGAAACCAGAGGATTTGTGGAGTAATCATTCAAAGGTTGTTCTTCCCAAGCCTCATAGGAAGGAAAGCTCCGCATGGAAAGCTATCCAAAAGATTCTAGAAGATGGAGAACAGATAGGCCTGAAACACTTTAGGCCAGTAAAACCGTTGGGATCTGGTGACACTGGCAGTGTGCATCTGGTGGAATTATGTGGAACTGGTGAATACTTTGCCATGAAAGCTATGGATAAAAATGTCATGCTCAACCGCAACAAGGTGCATAGAGCTTGTGCTGAAAGAGAAATTCTTGACATGTTGGATCACCCTTTTCTTCCCGCATTATATGCTTCATTTCAGACTAAAACACATATATGTCTGATTACCGATTACTGCCCTGGTGGAGAGCTCTTCCTGCTTTTGGACAGGCAACCCACAAAAGTCTTGAAGGAAGATGCTGTGAGATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGGTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGGGCATGTGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGCTTTTGATGCCAAATACAAATGAAAAGAAAAGGCAACATAAAGGTCAACAGAACCCAATATTCATGGCTGAACCTATGCGAGCATCAAATTCATTCGTTGGTACTGAAGAGTACATAGCTCCGGAAATCATAACTGGGGCGGGGCACACTAGTGCAGTGGACTGGTGGGCTCTTGGCATTCTTCTATATGAAATGCTTTATGGATATACACCATTTAGGGGAAAGACAAGGCAAAAGACATTTGCCAACATTCTTCACAAAGATCTTAAATTTCCATCAAGTATATCGGTAAGTCTCAATGCAAAGCAGTTAATGTACCGGTTGCTGCATAGGGATCCCAAGAATAGATTGGGTTCGCGTGAAGGAGCAAATGAAATCAAGCGACACCCATTCTTTCGTGGTGTCAATTGGGCTCTAGTCCGCTGCATGAACCCTCCTGAGCTTGATGCTCCTCCCTTGGAGACAACTGATGCTGAAAAGGAAGTTAAATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAA | 2877 | 46.85 | MEASDDSAKSPSLIPPLPRDSRGSLEVFNPSTYSTRPTNQAFRPQPTWKSWAEPRRSADEITSWMALKEPSPAPPLPLAQKSRAAEWGLMLKTDTETGKPQGVAVRTSGGDEPNYKTGTSRRNSGNSVRSSGEMSDEGGAGKDRAFPRVSEDLKDALSTFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGSGTDPEDVAKIREALHAGNSYCGRLLNYKKDGTPFWNLLTISPIKDENGNVLKFIGMQVEVSKHTEGSKEKMTRPNGLPESLIRYDARQKDMATNSVSELVQAVKKPRSLSESSDRPFMRKSEDGEQERPEAPGRRNSESVAPPRRNSQSGRRASMQRISELPEKKPRKSSRLSFMRIMRKSQAHTEEFDTEVLVDDTSDSEDDERPDSIDNKTRQREMRRGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSEHVEPLHNCIPESTAKESAKLVKETAENIDDAVRELPDANLKPEDLWSNHSKVVLPKPHRKESSAWKAIQKILEDGEQIGLKHFRPVKPLGSGDTGSVHLVELCGTGEYFAMKAMDKNVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHICLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGVIYRDLKPENVLLQSSGHVALTDFDLSCLTSCKPQLLMPNTNEKKRQHKGQQNPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPSSISVSLNAKQLMYRLLHRDPKNRLGSREGANEIKRHPFFRGVNWALVRCMNPPELDAPPLETTDAEKEVKSVDPELLDLQTNIF* | 959 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4659514 | 4675186 | + | Vvi6g351 | Vvi6g351 | 787928 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi6g351 | 958 | Gene3D | PAS domain | 413 | 578 | - | - | |
| Vvi6g351 | 958 | SMART | pac_2 | 226 | 268 | IPR001610 | - | |
| Vvi6g351 | 958 | SMART | pac_2 | 502 | 544 | IPR001610 | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 266 | 285 | - | - | |
| Vvi6g351 | 958 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 170 | 262 | IPR035965 | - | |
| Vvi6g351 | 958 | ProSitePatterns | Protein kinases ATP-binding region signature. | 632 | 655 | IPR017441 | GO:0005524 | |
| Vvi6g351 | 958 | Gene3D | Phosphorylase Kinase; domain 1 | 625 | 709 | - | - | |
| Vvi6g351 | 958 | SMART | serkin_6 | 626 | 913 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi6g351 | 958 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 441 | 540 | IPR035965 | - | |
| Vvi6g351 | 958 | Pfam | PAS domain | 448 | 540 | IPR000014 | - | |
| Vvi6g351 | 958 | Pfam | PAS domain | 170 | 266 | IPR000014 | - | |
| Vvi6g351 | 958 | PANTHER | PHOTOTROPIN-1 | 98 | 958 | - | - | |
| Vvi6g351 | 958 | ProSiteProfiles | PAC domain profile. | 223 | 277 | IPR000700 | - | |
| Vvi6g351 | 958 | SUPERFAMILY | Protein kinase-like (PK-like) | 607 | 935 | IPR011009 | - | |
| Vvi6g351 | 958 | ProSiteProfiles | PAS repeat profile. | 425 | 498 | IPR000014 | - | |
| Vvi6g351 | 958 | Gene3D | Transferase(Phosphotransferase) domain 1 | 710 | 923 | - | - | |
| Vvi6g351 | 958 | ProSiteProfiles | PAC domain profile. | 499 | 553 | IPR000700 | - | |
| Vvi6g351 | 958 | Pfam | Protein kinase domain | 629 | 913 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi6g351 | 958 | CDD | PAS | 176 | 265 | IPR000014 | - | |
| Vvi6g351 | 958 | CDD | PAS | 440 | 540 | IPR000014 | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 345 | 360 | - | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 304 | 379 | - | - | |
| Vvi6g351 | 958 | CDD | STKc_phototropin_like | 624 | 933 | - | - | |
| Vvi6g351 | 958 | Gene3D | PAS domain | 163 | 319 | - | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 313 | 339 | - | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| Vvi6g351 | 958 | ProSiteProfiles | PAS repeat profile. | 149 | 220 | IPR000014 | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 25 | 46 | - | - | |
| Vvi6g351 | 958 | TIGRFAM | sensory_box: PAS domain S-box protein | 176 | 270 | IPR000014 | - | |
| Vvi6g351 | 958 | TIGRFAM | sensory_box: PAS domain S-box protein | 450 | 544 | IPR000014 | - | |
| Vvi6g351 | 958 | ProSiteProfiles | Protein kinase domain profile. | 626 | 913 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi6g351 | 958 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 747 | 759 | IPR008271 | GO:0004672|GO:0006468 | |
| Vvi6g351 | 958 | PANTHER | FLIPPASE KINASE 1-RELATED | 98 | 958 | - | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 112 | 133 | - | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 94 | 144 | - | - | |
| Vvi6g351 | 958 | SMART | pas_2 | 151 | 220 | IPR000014 | - | |
| Vvi6g351 | 958 | SMART | pas_2 | 427 | 496 | IPR000014 | - | |
| Vvi6g351 | 958 | MobiDBLite | consensus disorder prediction | 391 | 419 | - | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 76703 | PF00069 | Pkinase | 1.50E-63 | CL0016 | Vvi | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi6g351 | K20715 | - | vvi:100262213 | 1906.34 |