Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g358 ATGTCTCCAGCAGCCTCATCAAGGTGGTGTCCAACCCCAGAGCAGCTCATGATCTTGGAGGAAATGTATAGGGGAGGAGTGAGAACACCCAATGCTTCTCAGATTCAACAGATCACTGCCCACCTCTCTTTCTATGGCAAGATTGAAGGCAAGAACGTCTTCTACTGGTTTCAGAATCACAAAGCAAGAGACAGACAGAAGCTCCGCAGGAAACTTAGCAAGCAGCTGCAGCAACAACAACAGTTTCACCAACACCATCACCAGCCGCTGCAGCAACAAAATCAACGCAATCAACCCCTCCTTCATTACCTTGACCCTCCTGTCTATTCTGCTTTCCATCAACTTTTCAATTATAACACAAGCCCCTTTCTTCCTCAGGTGATTCTAATTCTAATATAA 399 45.86 MSPAASSRWCPTPEQLMILEEMYRGGVRTPNASQIQQITAHLSFYGKIEGKNVFYWFQNHKARDRQKLRRKLSKQLQQQQQFHQHHHQPLQQQNQRNQPLLHYLDPPVYSAFHQLFNYNTSPFLPQVILILI* 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4759941 4760340 + Vvi6g358 Vvi6g358 787935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g358 132 Gene3D - 2 67 - -
Vvi6g358 132 CDD homeodomain 8 67 IPR001356 GO:0003677
Vvi6g358 132 PANTHER WUSCHEL-RELATED HOMEOBOX 3 1 102 - -
Vvi6g358 132 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 102 IPR044555 GO:0003700|GO:0099402
Vvi6g358 132 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Vvi6g358 132 SMART HOX_1 4 71 IPR001356 GO:0003677
Vvi6g358 132 Pfam Homeodomain 6 66 IPR001356 GO:0003677
Vvi6g358 132 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g358 Vvi13g442 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14939 PF00046 Homeodomain 7.10E-19 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g358 - - vvi:100260450 203.756